Hb_004162_310

Information

Type -
Description -
Location Contig4162: 277204-278041
Sequence    

Annotation

kegg
ID rcu:RCOM_0474900
description tonoplast intrinsic protein, putative
nr
ID XP_002523724.1
description tonoplast intrinsic protein, putative [Ricinus communis]
swissprot
ID P25818
description Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1
trembl
ID B9SCK5
description Tonoplast intrinsic protein, putative OS=Ricinus communis GN=RCOM_0474900 PE=3 SV=1
Gene Ontology
ID GO:0016021
description aquaporin tip1-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004162_310 0.0 - - tonoplast intrinsic protein, putative [Ricinus communis]
2 Hb_007320_050 0.0063457536 - - PREDICTED: uncharacterized protein LOC105637288 [Jatropha curcas]
3 Hb_014749_010 0.0139290009 - - hypothetical protein JCGZ_26951 [Jatropha curcas]
4 Hb_002659_020 0.0250661019 - - PREDICTED: cytochrome P450 714C2-like [Populus euphratica]
5 Hb_009659_060 0.0270976817 - - cell wall invertase [Manihot esculenta]
6 Hb_000560_050 0.053858367 - - hypothetical protein JCGZ_05738 [Jatropha curcas]
7 Hb_005389_180 0.054869076 - - PREDICTED: uncharacterized protein LOC105762407 [Gossypium raimondii]
8 Hb_000383_030 0.0568078359 - - -
9 Hb_000905_020 0.0663496322 - - PREDICTED: cytochrome P450 93A2-like [Jatropha curcas]
10 Hb_038135_010 0.0663923771 transcription factor TF Family: C2H2 Transcriptional regulator SUPERMAN, putative [Ricinus communis]
11 Hb_004324_140 0.0695121895 - - PREDICTED: uncharacterized protein LOC105648358 [Jatropha curcas]
12 Hb_184964_010 0.0702333237 - - -
13 Hb_019708_010 0.0704297861 - - -
14 Hb_002094_060 0.0711974932 - - -
15 Hb_005204_060 0.0724106265 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_002289_030 0.0807248391 - - PREDICTED: uncharacterized protein LOC103957017 [Pyrus x bretschneideri]
17 Hb_009398_010 0.0820260872 - - Putative pectate lyase 2 [Glycine soja]
18 Hb_119748_010 0.088519929 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
19 Hb_008775_050 0.1035036542 - - PREDICTED: probable glutathione S-transferase parC [Jatropha curcas]
20 Hb_006533_010 0.1072021295 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]

Gene co-expression network

sample Hb_004162_310 Hb_004162_310 Hb_007320_050 Hb_007320_050 Hb_004162_310--Hb_007320_050 Hb_014749_010 Hb_014749_010 Hb_004162_310--Hb_014749_010 Hb_002659_020 Hb_002659_020 Hb_004162_310--Hb_002659_020 Hb_009659_060 Hb_009659_060 Hb_004162_310--Hb_009659_060 Hb_000560_050 Hb_000560_050 Hb_004162_310--Hb_000560_050 Hb_005389_180 Hb_005389_180 Hb_004162_310--Hb_005389_180 Hb_007320_050--Hb_014749_010 Hb_007320_050--Hb_002659_020 Hb_007320_050--Hb_009659_060 Hb_007320_050--Hb_000560_050 Hb_038135_010 Hb_038135_010 Hb_007320_050--Hb_038135_010 Hb_014749_010--Hb_002659_020 Hb_014749_010--Hb_000560_050 Hb_014749_010--Hb_009659_060 Hb_014749_010--Hb_038135_010 Hb_002659_020--Hb_009659_060 Hb_002659_020--Hb_005389_180 Hb_000383_030 Hb_000383_030 Hb_002659_020--Hb_000383_030 Hb_009659_060--Hb_005389_180 Hb_009659_060--Hb_000383_030 Hb_000905_020 Hb_000905_020 Hb_009659_060--Hb_000905_020 Hb_000560_050--Hb_038135_010 Hb_019708_010 Hb_019708_010 Hb_000560_050--Hb_019708_010 Hb_119748_010 Hb_119748_010 Hb_000560_050--Hb_119748_010 Hb_006533_010 Hb_006533_010 Hb_000560_050--Hb_006533_010 Hb_005389_180--Hb_000383_030 Hb_005389_180--Hb_000905_020 Hb_004324_140 Hb_004324_140 Hb_005389_180--Hb_004324_140 Hb_184964_010 Hb_184964_010 Hb_005389_180--Hb_184964_010 Hb_002094_060 Hb_002094_060 Hb_005389_180--Hb_002094_060 Hb_005204_060 Hb_005204_060 Hb_005389_180--Hb_005204_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0693886 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.192295 0

CAGE analysis