Hb_004163_020

Information

Type -
Description -
Location Contig4163: 44653-45641
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004163_020 0.0 - - -
2 Hb_000349_190 0.1881469981 transcription factor TF Family: GRF hypothetical protein POPTR_0001s08310g [Populus trichocarpa]
3 Hb_000042_040 0.2272710829 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
4 Hb_000111_400 0.2278559969 - - hypothetical protein POPTR_0003s19310g [Populus trichocarpa]
5 Hb_001246_050 0.2434802706 - - PREDICTED: uncharacterized protein LOC105643262 [Jatropha curcas]
6 Hb_107429_010 0.2447565679 - - PREDICTED: calcium-dependent protein kinase 34 [Jatropha curcas]
7 Hb_000175_150 0.2517453668 desease resistance Gene Name: NB-ARC hypothetical protein B456_009G311700 [Gossypium raimondii]
8 Hb_008221_020 0.2600509314 - - hypothetical protein JCGZ_15014 [Jatropha curcas]
9 Hb_000975_140 0.2602859905 - - lactoylglutathione lyase family protein [Populus trichocarpa]
10 Hb_000917_170 0.2632214152 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]
11 Hb_004129_080 0.2649041049 - - PREDICTED: putative DNA-binding protein ESCAROLA [Prunus mume]
12 Hb_000264_120 0.2655411162 - - Stem-specific protein TSJT1, putative [Ricinus communis]
13 Hb_007432_010 0.2658549454 - - hypothetical protein B456_004G088300 [Gossypium raimondii]
14 Hb_000069_580 0.2713855316 - - conserved hypothetical protein [Ricinus communis]
15 Hb_011457_030 0.2778292276 - - type I inositol polyphosphate 5-phosphatase, putative [Ricinus communis]
16 Hb_002435_020 0.2901007748 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
17 Hb_000732_110 0.2926140696 - - hypothetical protein JCGZ_21339 [Jatropha curcas]
18 Hb_000740_020 0.2956736691 transcription factor TF Family: MYB-related asymmetric leaves1 and rough sheath, putative [Ricinus communis]
19 Hb_000107_670 0.3033972901 transcription factor TF Family: MIKC floral homeotic protein AGAMOUS [Jatropha curcas]
20 Hb_002979_030 0.3129976923 - - PREDICTED: serine/threonine-protein kinase Aurora-1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004163_020 Hb_004163_020 Hb_000349_190 Hb_000349_190 Hb_004163_020--Hb_000349_190 Hb_000042_040 Hb_000042_040 Hb_004163_020--Hb_000042_040 Hb_000111_400 Hb_000111_400 Hb_004163_020--Hb_000111_400 Hb_001246_050 Hb_001246_050 Hb_004163_020--Hb_001246_050 Hb_107429_010 Hb_107429_010 Hb_004163_020--Hb_107429_010 Hb_000175_150 Hb_000175_150 Hb_004163_020--Hb_000175_150 Hb_004129_080 Hb_004129_080 Hb_000349_190--Hb_004129_080 Hb_000264_120 Hb_000264_120 Hb_000349_190--Hb_000264_120 Hb_000975_140 Hb_000975_140 Hb_000349_190--Hb_000975_140 Hb_000349_190--Hb_001246_050 Hb_000349_190--Hb_000042_040 Hb_000753_220 Hb_000753_220 Hb_000042_040--Hb_000753_220 Hb_002585_050 Hb_002585_050 Hb_000042_040--Hb_002585_050 Hb_000592_150 Hb_000592_150 Hb_000042_040--Hb_000592_150 Hb_004228_050 Hb_004228_050 Hb_000042_040--Hb_004228_050 Hb_002305_040 Hb_002305_040 Hb_000042_040--Hb_002305_040 Hb_075653_010 Hb_075653_010 Hb_000042_040--Hb_075653_010 Hb_000111_400--Hb_000349_190 Hb_004116_120 Hb_004116_120 Hb_000111_400--Hb_004116_120 Hb_000111_400--Hb_004129_080 Hb_026527_040 Hb_026527_040 Hb_000111_400--Hb_026527_040 Hb_001329_170 Hb_001329_170 Hb_000111_400--Hb_001329_170 Hb_008221_020 Hb_008221_020 Hb_001246_050--Hb_008221_020 Hb_000069_580 Hb_000069_580 Hb_001246_050--Hb_000069_580 Hb_002435_020 Hb_002435_020 Hb_001246_050--Hb_002435_020 Hb_008014_060 Hb_008014_060 Hb_001246_050--Hb_008014_060 Hb_002259_180 Hb_002259_180 Hb_001246_050--Hb_002259_180 Hb_000740_020 Hb_000740_020 Hb_107429_010--Hb_000740_020 Hb_001437_160 Hb_001437_160 Hb_107429_010--Hb_001437_160 Hb_000917_170 Hb_000917_170 Hb_107429_010--Hb_000917_170 Hb_001226_010 Hb_001226_010 Hb_107429_010--Hb_001226_010 Hb_011457_030 Hb_011457_030 Hb_107429_010--Hb_011457_030 Hb_160246_010 Hb_160246_010 Hb_000175_150--Hb_160246_010 Hb_001143_150 Hb_001143_150 Hb_000175_150--Hb_001143_150 Hb_003740_030 Hb_003740_030 Hb_000175_150--Hb_003740_030 Hb_000663_070 Hb_000663_070 Hb_000175_150--Hb_000663_070 Hb_000111_430 Hb_000111_430 Hb_000175_150--Hb_000111_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.215805 0.036494 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0714002 0 0 0

CAGE analysis