Hb_004166_010

Information

Type -
Description -
Location Contig4166: 71180-71644
Sequence    

Annotation

kegg
ID tcc:TCM_006565
description hypothetical protein
nr
ID XP_012077716.1
description PREDICTED: uncharacterized protein LOC105638508 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DXS2
description Uncharacterized protein OS=Theobroma cacao GN=TCM_006565 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004166_010 0.0 - - PREDICTED: uncharacterized protein LOC105638508 [Jatropha curcas]
2 Hb_001863_450 0.0850200396 - - cryptochrome 1.2 [Populus tremula]
3 Hb_000172_080 0.1046915161 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
4 Hb_000061_100 0.1081438036 - - hypothetical protein CISIN_1g0053742mg, partial [Citrus sinensis]
5 Hb_008253_040 0.1182802935 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
6 Hb_004466_070 0.1263653585 - - hypothetical protein RCOM_1447500 [Ricinus communis]
7 Hb_002571_010 0.1314478775 - - cationic amino acid transporter, putative [Ricinus communis]
8 Hb_001345_030 0.1339360587 - - hypothetical protein POPTR_0007s10390g, partial [Populus trichocarpa]
9 Hb_000808_160 0.1369558705 - - PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]
10 Hb_006618_020 0.1474490871 - - Vacuolar-processing enzyme precursor [Ricinus communis]
11 Hb_000522_130 0.1481660078 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
12 Hb_158696_010 0.1487509035 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
13 Hb_000221_060 0.1514279991 - - -
14 Hb_000359_080 0.153050503 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
15 Hb_004030_070 0.1540456047 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
16 Hb_000363_110 0.1567228925 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 21 [Jatropha curcas]
17 Hb_027402_100 0.1577312363 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_11638 [Jatropha curcas]
18 Hb_000126_040 0.1580431501 - - kinase, putative [Ricinus communis]
19 Hb_001662_170 0.1585940258 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
20 Hb_002739_070 0.1587031157 - - hypothetical protein B456_002G169900 [Gossypium raimondii]

Gene co-expression network

sample Hb_004166_010 Hb_004166_010 Hb_001863_450 Hb_001863_450 Hb_004166_010--Hb_001863_450 Hb_000172_080 Hb_000172_080 Hb_004166_010--Hb_000172_080 Hb_000061_100 Hb_000061_100 Hb_004166_010--Hb_000061_100 Hb_008253_040 Hb_008253_040 Hb_004166_010--Hb_008253_040 Hb_004466_070 Hb_004466_070 Hb_004166_010--Hb_004466_070 Hb_002571_010 Hb_002571_010 Hb_004166_010--Hb_002571_010 Hb_001863_450--Hb_004466_070 Hb_003371_140 Hb_003371_140 Hb_001863_450--Hb_003371_140 Hb_033642_070 Hb_033642_070 Hb_001863_450--Hb_033642_070 Hb_001863_450--Hb_008253_040 Hb_001863_450--Hb_000172_080 Hb_000359_080 Hb_000359_080 Hb_000172_080--Hb_000359_080 Hb_078901_010 Hb_078901_010 Hb_000172_080--Hb_078901_010 Hb_000172_080--Hb_008253_040 Hb_001345_030 Hb_001345_030 Hb_000172_080--Hb_001345_030 Hb_098160_010 Hb_098160_010 Hb_000172_080--Hb_098160_010 Hb_000808_160 Hb_000808_160 Hb_000061_100--Hb_000808_160 Hb_000061_100--Hb_002571_010 Hb_000061_100--Hb_000172_080 Hb_000363_110 Hb_000363_110 Hb_000061_100--Hb_000363_110 Hb_000995_010 Hb_000995_010 Hb_000061_100--Hb_000995_010 Hb_000856_410 Hb_000856_410 Hb_008253_040--Hb_000856_410 Hb_004030_070 Hb_004030_070 Hb_008253_040--Hb_004030_070 Hb_008253_040--Hb_001345_030 Hb_158696_010 Hb_158696_010 Hb_004466_070--Hb_158696_010 Hb_001248_110 Hb_001248_110 Hb_004466_070--Hb_001248_110 Hb_004466_070--Hb_033642_070 Hb_004466_070--Hb_003371_140 Hb_002571_010--Hb_000808_160 Hb_009247_030 Hb_009247_030 Hb_002571_010--Hb_009247_030 Hb_001879_050 Hb_001879_050 Hb_002571_010--Hb_001879_050 Hb_002571_010--Hb_000172_080 Hb_001754_200 Hb_001754_200 Hb_002571_010--Hb_001754_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.571644 19.7671 3.94582 4.49138 0.44268 1.16248
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.06133 0.357294 0.19857 3.34239 5.03306

CAGE analysis