Hb_004166_020

Information

Type -
Description -
Location Contig4166: 72611-73068
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004166_020 0.0 - - -
2 Hb_014361_020 0.0558506829 - - PREDICTED: probable protein phosphatase 2C 78 [Jatropha curcas]
3 Hb_000085_220 0.0682948427 - - conserved hypothetical protein [Ricinus communis]
4 Hb_174101_010 0.073536555 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
5 Hb_000092_030 0.0860013081 - - PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
6 Hb_006269_010 0.0932679602 - - hypothetical protein JCGZ_21552 [Jatropha curcas]
7 Hb_000497_100 0.098961028 - - respiratory burst oxidase D [Manihot esculenta]
8 Hb_001544_070 0.1051894239 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
9 Hb_001248_170 0.1065110402 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
10 Hb_000477_110 0.1091199418 transcription factor TF Family: GRAS PREDICTED: DELLA protein SLR1-like [Jatropha curcas]
11 Hb_167272_010 0.1105623835 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
12 Hb_007894_030 0.1123735622 - - calcium-dependent protein kinase, putative [Ricinus communis]
13 Hb_000946_050 0.114563786 - - cytochrome P450, putative [Ricinus communis]
14 Hb_000411_050 0.1157898908 - - hypothetical protein AMTR_s00066p00166230 [Amborella trichopoda]
15 Hb_000382_030 0.1159723812 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
16 Hb_131662_010 0.1174841016 - - Insulin-degrading enzyme, putative [Ricinus communis]
17 Hb_001123_170 0.1177456057 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000237_070 0.1187925728 - - Purple acid phosphatase precursor, putative [Ricinus communis]
19 Hb_189034_010 0.1204141816 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_002370_060 0.1211610468 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Populus euphratica]

Gene co-expression network

sample Hb_004166_020 Hb_004166_020 Hb_014361_020 Hb_014361_020 Hb_004166_020--Hb_014361_020 Hb_000085_220 Hb_000085_220 Hb_004166_020--Hb_000085_220 Hb_174101_010 Hb_174101_010 Hb_004166_020--Hb_174101_010 Hb_000092_030 Hb_000092_030 Hb_004166_020--Hb_000092_030 Hb_006269_010 Hb_006269_010 Hb_004166_020--Hb_006269_010 Hb_000497_100 Hb_000497_100 Hb_004166_020--Hb_000497_100 Hb_014361_020--Hb_000085_220 Hb_167272_010 Hb_167272_010 Hb_014361_020--Hb_167272_010 Hb_014361_020--Hb_006269_010 Hb_014361_020--Hb_174101_010 Hb_014361_020--Hb_000497_100 Hb_000085_220--Hb_000092_030 Hb_000085_220--Hb_167272_010 Hb_031862_020 Hb_031862_020 Hb_000085_220--Hb_031862_020 Hb_000085_220--Hb_006269_010 Hb_001544_070 Hb_001544_070 Hb_174101_010--Hb_001544_070 Hb_001174_030 Hb_001174_030 Hb_174101_010--Hb_001174_030 Hb_008092_020 Hb_008092_020 Hb_174101_010--Hb_008092_020 Hb_000472_020 Hb_000472_020 Hb_174101_010--Hb_000472_020 Hb_005034_010 Hb_005034_010 Hb_174101_010--Hb_005034_010 Hb_000946_050 Hb_000946_050 Hb_000092_030--Hb_000946_050 Hb_000092_030--Hb_001544_070 Hb_004122_060 Hb_004122_060 Hb_000092_030--Hb_004122_060 Hb_000092_030--Hb_006269_010 Hb_001153_090 Hb_001153_090 Hb_006269_010--Hb_001153_090 Hb_006269_010--Hb_001174_030 Hb_000477_110 Hb_000477_110 Hb_006269_010--Hb_000477_110 Hb_020285_010 Hb_020285_010 Hb_000497_100--Hb_020285_010 Hb_001369_070 Hb_001369_070 Hb_000497_100--Hb_001369_070 Hb_000028_460 Hb_000028_460 Hb_000497_100--Hb_000028_460 Hb_007894_030 Hb_007894_030 Hb_000497_100--Hb_007894_030 Hb_038777_010 Hb_038777_010 Hb_000497_100--Hb_038777_010 Hb_131662_010 Hb_131662_010 Hb_000497_100--Hb_131662_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.688531 0.380602 0.518549 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.380276 0.263634

CAGE analysis