Hb_004176_070

Information

Type -
Description -
Location Contig4176: 114175-131443
Sequence    

Annotation

kegg
ID pop:POPTR_0017s06630g
description EXS family protein
nr
ID XP_012078121.1
description PREDICTED: SPX and EXS domain-containing protein 1-like isoform X1 [Jatropha curcas]
swissprot
ID Q55B06
description SPX and EXS domain-containing protein 1 OS=Dictyostelium discoideum GN=DDB_G0271664 PE=3 SV=2
trembl
ID A0A067LMT5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17316 PE=4 SV=1
Gene Ontology
ID GO:0016021
description spx and exs domain-containing protein 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41295: 114170-114320 , PASA_asmbl_41296: 114355-131392 , PASA_asmbl_41297: 121180-121488
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004176_070 0.0 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X1 [Jatropha curcas]
2 Hb_005000_330 0.0911809395 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002042_150 0.1008855789 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
4 Hb_000384_070 0.1036186861 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004230_020 0.1050715384 - - PREDICTED: uncharacterized protein LOC105648105 [Jatropha curcas]
6 Hb_045003_010 0.1055990798 - - Stomatin-1, putative [Ricinus communis]
7 Hb_000167_080 0.1060368134 - - PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
8 Hb_001269_190 0.1069788047 - - PREDICTED: Golgi SNAP receptor complex member 1-1 [Jatropha curcas]
9 Hb_000510_300 0.1094167484 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
10 Hb_000087_070 0.1122506031 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
11 Hb_000362_180 0.1125245432 - - Pdap1 [Gossypium arboreum]
12 Hb_000768_210 0.1130500715 - - PREDICTED: uncharacterized protein LOC105632522 [Jatropha curcas]
13 Hb_002411_040 0.1131981117 - - PREDICTED: cysteine proteinase inhibitor 6 [Jatropha curcas]
14 Hb_012796_020 0.1133722319 - - PREDICTED: ADP-ribosylation factor 1 [Prunus mume]
15 Hb_010368_050 0.1136366517 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
16 Hb_002995_050 0.1145473781 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]
17 Hb_019181_030 0.1160372667 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 6-like [Pyrus x bretschneideri]
18 Hb_154948_040 0.1166420874 - - hypothetical protein B456_013G043800 [Gossypium raimondii]
19 Hb_086085_020 0.11798814 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein isoform 3 [Theobroma cacao]
20 Hb_001427_160 0.118910969 - - o-methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004176_070 Hb_004176_070 Hb_005000_330 Hb_005000_330 Hb_004176_070--Hb_005000_330 Hb_002042_150 Hb_002042_150 Hb_004176_070--Hb_002042_150 Hb_000384_070 Hb_000384_070 Hb_004176_070--Hb_000384_070 Hb_004230_020 Hb_004230_020 Hb_004176_070--Hb_004230_020 Hb_045003_010 Hb_045003_010 Hb_004176_070--Hb_045003_010 Hb_000167_080 Hb_000167_080 Hb_004176_070--Hb_000167_080 Hb_000359_150 Hb_000359_150 Hb_005000_330--Hb_000359_150 Hb_002686_110 Hb_002686_110 Hb_005000_330--Hb_002686_110 Hb_005000_330--Hb_000167_080 Hb_000473_020 Hb_000473_020 Hb_005000_330--Hb_000473_020 Hb_004784_020 Hb_004784_020 Hb_005000_330--Hb_004784_020 Hb_002042_150--Hb_045003_010 Hb_004109_340 Hb_004109_340 Hb_002042_150--Hb_004109_340 Hb_000179_270 Hb_000179_270 Hb_002042_150--Hb_000179_270 Hb_002042_150--Hb_000384_070 Hb_011344_120 Hb_011344_120 Hb_002042_150--Hb_011344_120 Hb_004108_220 Hb_004108_220 Hb_002042_150--Hb_004108_220 Hb_002995_050 Hb_002995_050 Hb_000384_070--Hb_002995_050 Hb_001489_110 Hb_001489_110 Hb_000384_070--Hb_001489_110 Hb_002045_070 Hb_002045_070 Hb_000384_070--Hb_002045_070 Hb_004607_090 Hb_004607_090 Hb_000384_070--Hb_004607_090 Hb_002133_020 Hb_002133_020 Hb_000384_070--Hb_002133_020 Hb_004230_020--Hb_045003_010 Hb_002301_160 Hb_002301_160 Hb_004230_020--Hb_002301_160 Hb_000849_130 Hb_000849_130 Hb_004230_020--Hb_000849_130 Hb_005460_060 Hb_005460_060 Hb_004230_020--Hb_005460_060 Hb_004230_020--Hb_002042_150 Hb_001353_010 Hb_001353_010 Hb_045003_010--Hb_001353_010 Hb_154948_040 Hb_154948_040 Hb_045003_010--Hb_154948_040 Hb_000566_120 Hb_000566_120 Hb_045003_010--Hb_000566_120 Hb_006326_040 Hb_006326_040 Hb_045003_010--Hb_006326_040 Hb_045003_010--Hb_002995_050 Hb_000453_160 Hb_000453_160 Hb_000167_080--Hb_000453_160 Hb_001168_020 Hb_001168_020 Hb_000167_080--Hb_001168_020 Hb_000167_080--Hb_154948_040 Hb_086085_020 Hb_086085_020 Hb_000167_080--Hb_086085_020 Hb_001252_130 Hb_001252_130 Hb_000167_080--Hb_001252_130 Hb_001287_080 Hb_001287_080 Hb_000167_080--Hb_001287_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.85336 1.94901 4.02778 9.177 2.29942 3.98733
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.36728 5.79257 2.48021 2.87541 3.29965

CAGE analysis