Hb_004176_090

Information

Type -
Description -
Location Contig4176: 131606-132393
Sequence    

Annotation

kegg
ID rcu:RCOM_1550090
description Nuc-1 negative regulatory protein preg, putative
nr
ID XP_002515728.1
description Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
swissprot
ID Q9LJ45
description Cyclin-U1-1 OS=Arabidopsis thaliana GN=CYCU1-1 PE=1 SV=1
trembl
ID B9RPQ9
description Nuc-1 negative regulatory protein preg, putative OS=Ricinus communis GN=RCOM_1550090 PE=4 SV=1
Gene Ontology
ID GO:0019901
description cyclin isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41296: 114355-131392
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004176_090 0.0 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
2 Hb_145331_010 0.0379114066 transcription factor TF Family: NAC hypothetical protein POPTR_0016s07690g [Populus trichocarpa]
3 Hb_137701_020 0.1307269919 - - putative protein kinase [Oryza sativa Japonica Group]
4 Hb_001021_020 0.1525437856 - - hypothetical protein JCGZ_13899 [Jatropha curcas]
5 Hb_001205_050 0.1698652955 - - -
6 Hb_131719_010 0.1705491645 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
7 Hb_005183_060 0.1722424529 - - hypothetical protein JCGZ_04271 [Jatropha curcas]
8 Hb_000189_460 0.1787876949 - - -
9 Hb_147069_010 0.1823747124 - - Phosphate import ATP-binding PstB 2 [Gossypium arboreum]
10 Hb_001040_090 0.1860684707 - - PREDICTED: tetraspanin-19-like [Jatropha curcas]
11 Hb_004880_120 0.186181147 - - PREDICTED: calcium-binding protein PBP1 [Jatropha curcas]
12 Hb_002977_020 0.1895967348 - - PREDICTED: glycine-rich cell wall structural protein 1.8-like [Nelumbo nucifera]
13 Hb_000832_360 0.1978232352 - - -
14 Hb_003349_020 0.1979975678 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Beta vulgaris subsp. vulgaris]
15 Hb_100404_010 0.2013189006 - - Cysteine-rich receptor-like protein kinase 29 [Glycine soja]
16 Hb_001631_110 0.2051076176 - - PREDICTED: LOW QUALITY PROTEIN: gamma-glutamyltranspeptidase 1-like [Populus euphratica]
17 Hb_000230_250 0.2062211844 - - PREDICTED: pyruvate, phosphate dikinase, chloroplastic [Jatropha curcas]
18 Hb_000160_080 0.2096812572 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM2b-like [Jatropha curcas]
19 Hb_063869_010 0.2098945728 - - JHL22C18.10 [Jatropha curcas]
20 Hb_017098_020 0.2133697798 - - Zinc finger protein GIS2 [Medicago truncatula]

Gene co-expression network

sample Hb_004176_090 Hb_004176_090 Hb_145331_010 Hb_145331_010 Hb_004176_090--Hb_145331_010 Hb_137701_020 Hb_137701_020 Hb_004176_090--Hb_137701_020 Hb_001021_020 Hb_001021_020 Hb_004176_090--Hb_001021_020 Hb_001205_050 Hb_001205_050 Hb_004176_090--Hb_001205_050 Hb_131719_010 Hb_131719_010 Hb_004176_090--Hb_131719_010 Hb_005183_060 Hb_005183_060 Hb_004176_090--Hb_005183_060 Hb_145331_010--Hb_001021_020 Hb_145331_010--Hb_001205_050 Hb_000189_460 Hb_000189_460 Hb_145331_010--Hb_000189_460 Hb_002977_020 Hb_002977_020 Hb_145331_010--Hb_002977_020 Hb_147069_010 Hb_147069_010 Hb_145331_010--Hb_147069_010 Hb_063869_010 Hb_063869_010 Hb_137701_020--Hb_063869_010 Hb_004880_120 Hb_004880_120 Hb_137701_020--Hb_004880_120 Hb_137701_020--Hb_005183_060 Hb_042141_010 Hb_042141_010 Hb_137701_020--Hb_042141_010 Hb_007507_030 Hb_007507_030 Hb_137701_020--Hb_007507_030 Hb_001021_020--Hb_000189_460 Hb_001021_020--Hb_002977_020 Hb_001242_030 Hb_001242_030 Hb_001021_020--Hb_001242_030 Hb_011900_030 Hb_011900_030 Hb_001021_020--Hb_011900_030 Hb_011930_060 Hb_011930_060 Hb_001021_020--Hb_011930_060 Hb_001205_050--Hb_147069_010 Hb_100404_010 Hb_100404_010 Hb_001205_050--Hb_100404_010 Hb_000832_360 Hb_000832_360 Hb_001205_050--Hb_000832_360 Hb_000103_380 Hb_000103_380 Hb_001205_050--Hb_000103_380 Hb_001105_140 Hb_001105_140 Hb_001205_050--Hb_001105_140 Hb_073467_010 Hb_073467_010 Hb_001205_050--Hb_073467_010 Hb_001040_090 Hb_001040_090 Hb_131719_010--Hb_001040_090 Hb_001953_110 Hb_001953_110 Hb_131719_010--Hb_001953_110 Hb_003349_020 Hb_003349_020 Hb_131719_010--Hb_003349_020 Hb_003970_010 Hb_003970_010 Hb_131719_010--Hb_003970_010 Hb_002818_160 Hb_002818_160 Hb_131719_010--Hb_002818_160 Hb_135714_010 Hb_135714_010 Hb_131719_010--Hb_135714_010 Hb_062503_010 Hb_062503_010 Hb_005183_060--Hb_062503_010 Hb_101778_010 Hb_101778_010 Hb_005183_060--Hb_101778_010 Hb_005183_060--Hb_000103_380 Hb_005183_060--Hb_000832_360 Hb_005183_060--Hb_007507_030 Hb_002876_010 Hb_002876_010 Hb_005183_060--Hb_002876_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.297536 0.357296 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.400206

CAGE analysis