Hb_004182_050

Information

Type -
Description -
Location Contig4182: 121834-140653
Sequence    

Annotation

kegg
ID tcc:TCM_041219
description BRI1 suppressor 1 (BSU1)-like 2 isoform 1
nr
ID XP_012066346.1
description PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X2 [Jatropha curcas]
swissprot
ID Q9SHS7
description Serine/threonine-protein phosphatase BSL3 OS=Arabidopsis thaliana GN=BSL3 PE=1 SV=2
trembl
ID A0A067L3F3
description Serine/threonine-protein phosphatase OS=Jatropha curcas GN=JCGZ_23904 PE=3 SV=1
Gene Ontology
ID GO:0004721
description bri1 suppressor 1 -like 2 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41378: 122130-140175
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004182_050 0.0 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X2 [Jatropha curcas]
2 Hb_012760_100 0.0560677876 - - Pre-rRNA-processing protein ESF1, putative [Ricinus communis]
3 Hb_001814_030 0.0561587105 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
4 Hb_012395_140 0.0585443642 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
5 Hb_001550_060 0.0604113454 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]
6 Hb_000174_270 0.0631299115 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X1 [Jatropha curcas]
7 Hb_000412_010 0.0661825929 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
8 Hb_159558_010 0.0662502872 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
9 Hb_001199_100 0.0681180055 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
10 Hb_003494_020 0.0691942841 - - ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
11 Hb_000395_070 0.0694513245 - - PREDICTED: serine/threonine-protein kinase BLUS1 isoform X2 [Jatropha curcas]
12 Hb_009976_020 0.0711645367 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105631286 [Jatropha curcas]
13 Hb_001343_040 0.0719410812 - - PREDICTED: uncharacterized protein LOC105638555 [Jatropha curcas]
14 Hb_000696_050 0.0724446377 - - PREDICTED: CSC1-like protein At4g35870 [Jatropha curcas]
15 Hb_003206_130 0.0726332118 - - PREDICTED: protein NRDE2 homolog [Jatropha curcas]
16 Hb_006420_040 0.0726422923 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X2 [Jatropha curcas]
17 Hb_009270_020 0.0727621639 - - PREDICTED: LOW QUALITY PROTEIN: helicase and polymerase-containing protein TEBICHI [Jatropha curcas]
18 Hb_000166_130 0.073544911 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001004_060 0.073985882 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
20 Hb_002732_040 0.0743164376 - - PREDICTED: uncharacterized protein LOC105628163 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004182_050 Hb_004182_050 Hb_012760_100 Hb_012760_100 Hb_004182_050--Hb_012760_100 Hb_001814_030 Hb_001814_030 Hb_004182_050--Hb_001814_030 Hb_012395_140 Hb_012395_140 Hb_004182_050--Hb_012395_140 Hb_001550_060 Hb_001550_060 Hb_004182_050--Hb_001550_060 Hb_000174_270 Hb_000174_270 Hb_004182_050--Hb_000174_270 Hb_000412_010 Hb_000412_010 Hb_004182_050--Hb_000412_010 Hb_009976_020 Hb_009976_020 Hb_012760_100--Hb_009976_020 Hb_056691_060 Hb_056691_060 Hb_012760_100--Hb_056691_060 Hb_007994_010 Hb_007994_010 Hb_012760_100--Hb_007994_010 Hb_003734_010 Hb_003734_010 Hb_012760_100--Hb_003734_010 Hb_005215_010 Hb_005215_010 Hb_012760_100--Hb_005215_010 Hb_004586_220 Hb_004586_220 Hb_001814_030--Hb_004586_220 Hb_002205_250 Hb_002205_250 Hb_001814_030--Hb_002205_250 Hb_000614_210 Hb_000614_210 Hb_001814_030--Hb_000614_210 Hb_001814_030--Hb_012395_140 Hb_159558_010 Hb_159558_010 Hb_001814_030--Hb_159558_010 Hb_020378_030 Hb_020378_030 Hb_001814_030--Hb_020378_030 Hb_000395_070 Hb_000395_070 Hb_012395_140--Hb_000395_070 Hb_012395_140--Hb_001550_060 Hb_000579_230 Hb_000579_230 Hb_012395_140--Hb_000579_230 Hb_002329_040 Hb_002329_040 Hb_012395_140--Hb_002329_040 Hb_002815_030 Hb_002815_030 Hb_012395_140--Hb_002815_030 Hb_006420_040 Hb_006420_040 Hb_001550_060--Hb_006420_040 Hb_003206_130 Hb_003206_130 Hb_001550_060--Hb_003206_130 Hb_000025_320 Hb_000025_320 Hb_001550_060--Hb_000025_320 Hb_001195_320 Hb_001195_320 Hb_001550_060--Hb_001195_320 Hb_001550_060--Hb_000395_070 Hb_003494_020 Hb_003494_020 Hb_000174_270--Hb_003494_020 Hb_001999_290 Hb_001999_290 Hb_000174_270--Hb_001999_290 Hb_000028_130 Hb_000028_130 Hb_000174_270--Hb_000028_130 Hb_062226_070 Hb_062226_070 Hb_000174_270--Hb_062226_070 Hb_000037_190 Hb_000037_190 Hb_000174_270--Hb_000037_190 Hb_001635_120 Hb_001635_120 Hb_000174_270--Hb_001635_120 Hb_003060_060 Hb_003060_060 Hb_000412_010--Hb_003060_060 Hb_000412_010--Hb_000395_070 Hb_000412_010--Hb_159558_010 Hb_000412_010--Hb_001550_060 Hb_001628_070 Hb_001628_070 Hb_000412_010--Hb_001628_070 Hb_000230_260 Hb_000230_260 Hb_000412_010--Hb_000230_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.8146 11.0634 5.65178 9.20602 10.7433 11.0647
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.02875 6.27509 8.91798 9.97264 12.7171

CAGE analysis