Hb_004185_040

Information

Type -
Description -
Location Contig4185: 156485-157885
Sequence    

Annotation

kegg
ID rcu:RCOM_0586420
description polygalacturonase, putative
nr
ID XP_002522983.1
description polygalacturonase, putative [Ricinus communis]
swissprot
ID Q0JEP3
description BURP domain-containing protein 5 OS=Oryza sativa subsp. japonica GN=BURP5 PE=2 SV=2
trembl
ID B9SAG4
description Polygalacturonase, putative OS=Ricinus communis GN=RCOM_0586420 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004185_040 0.0 - - polygalacturonase, putative [Ricinus communis]
2 Hb_004195_040 0.0477397727 - - salicylic acid methyl transferase [Capsicum annuum]
3 Hb_012019_030 0.0608171558 - - hypothetical protein POPTR_0005s23360g [Populus trichocarpa]
4 Hb_001173_050 0.0694217011 - - DUF26 domain-containing protein 2 precursor, putative [Ricinus communis]
5 Hb_011856_010 0.0743270547 - - cytochrome P450, putative [Ricinus communis]
6 Hb_139460_010 0.0757217332 - - PREDICTED: beta-glucosidase 18-like [Jatropha curcas]
7 Hb_000813_120 0.0765824304 - - PREDICTED: serine carboxypeptidase-like 18 [Tarenaya hassleriana]
8 Hb_059162_010 0.0778731908 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_041769_010 0.078531085 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
10 Hb_025526_090 0.0804572506 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
11 Hb_122574_020 0.0922928202 - - hypothetical protein JCGZ_24076 [Jatropha curcas]
12 Hb_011824_010 0.0929180819 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
13 Hb_001141_170 0.0946512947 - - PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Jatropha curcas]
14 Hb_005731_080 0.0976423514 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
15 Hb_003074_070 0.0984333782 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
16 Hb_010712_020 0.0992616434 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
17 Hb_016172_010 0.0994370711 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
18 Hb_001621_140 0.1005690603 - - PREDICTED: glycerol-3-phosphate acyltransferase 5 [Jatropha curcas]
19 Hb_002311_050 0.1010931363 - - PREDICTED: uncharacterized protein LOC105122837 isoform X2 [Populus euphratica]
20 Hb_002422_040 0.1037465911 - - hypothetical protein POPTR_0016s02350g [Populus trichocarpa]

Gene co-expression network

sample Hb_004185_040 Hb_004185_040 Hb_004195_040 Hb_004195_040 Hb_004185_040--Hb_004195_040 Hb_012019_030 Hb_012019_030 Hb_004185_040--Hb_012019_030 Hb_001173_050 Hb_001173_050 Hb_004185_040--Hb_001173_050 Hb_011856_010 Hb_011856_010 Hb_004185_040--Hb_011856_010 Hb_139460_010 Hb_139460_010 Hb_004185_040--Hb_139460_010 Hb_000813_120 Hb_000813_120 Hb_004185_040--Hb_000813_120 Hb_004195_040--Hb_012019_030 Hb_001141_170 Hb_001141_170 Hb_004195_040--Hb_001141_170 Hb_004195_040--Hb_139460_010 Hb_004195_040--Hb_000813_120 Hb_005731_080 Hb_005731_080 Hb_004195_040--Hb_005731_080 Hb_012019_030--Hb_001141_170 Hb_001114_300 Hb_001114_300 Hb_012019_030--Hb_001114_300 Hb_006478_190 Hb_006478_190 Hb_012019_030--Hb_006478_190 Hb_012019_030--Hb_005731_080 Hb_001173_050--Hb_011856_010 Hb_025526_090 Hb_025526_090 Hb_001173_050--Hb_025526_090 Hb_001173_050--Hb_139460_010 Hb_000567_310 Hb_000567_310 Hb_001173_050--Hb_000567_310 Hb_001328_110 Hb_001328_110 Hb_001173_050--Hb_001328_110 Hb_011856_010--Hb_139460_010 Hb_011856_010--Hb_025526_090 Hb_011824_010 Hb_011824_010 Hb_011856_010--Hb_011824_010 Hb_002615_050 Hb_002615_050 Hb_011856_010--Hb_002615_050 Hb_139460_010--Hb_011824_010 Hb_139460_010--Hb_002615_050 Hb_000160_230 Hb_000160_230 Hb_139460_010--Hb_000160_230 Hb_007810_140 Hb_007810_140 Hb_139460_010--Hb_007810_140 Hb_183700_010 Hb_183700_010 Hb_000813_120--Hb_183700_010 Hb_039342_030 Hb_039342_030 Hb_000813_120--Hb_039342_030 Hb_000813_120--Hb_012019_030 Hb_000813_120--Hb_001173_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0192018 1.433 0.086094 0.209469 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 5.49817 0

CAGE analysis