Hb_004195_060

Information

Type -
Description -
Location Contig4195: 86731-93674
Sequence    

Annotation

kegg
ID pop:POPTR_0007s13280g
description POPTRDRAFT_219355; hypothetical protein
nr
ID XP_012491632.1
description PREDICTED: uncharacterized protein LOC105803780 isoform X1 [Gossypium raimondii]
swissprot
ID P55607
description Uncharacterized protein y4oV OS=Rhizobium sp. (strain NGR234) GN=NGR_a02140 PE=4 SV=1
trembl
ID A0A0D2SNC0
description Gossypium raimondii chromosome 7, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_007G201200 PE=4 SV=1
Gene Ontology
ID GO:0003824
description tim-barrel signal transduction protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41409: 87867-90941 , PASA_asmbl_41410: 90972-93498 , PASA_asmbl_41411: 93248-96751
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004195_060 0.0 - - PREDICTED: uncharacterized protein LOC105803780 isoform X1 [Gossypium raimondii]
2 Hb_000589_040 0.1023403433 desease resistance Gene Name: zf-BED PREDICTED: probable disease resistance protein At1g12280 [Jatropha curcas]
3 Hb_030627_060 0.103719074 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
4 Hb_111985_080 0.105096558 - - PREDICTED: pentatricopeptide repeat-containing protein At1g19720 [Jatropha curcas]
5 Hb_004970_160 0.1060697826 - - PREDICTED: THO complex subunit 5B-like isoform X2 [Jatropha curcas]
6 Hb_010417_060 0.1087911253 - - PREDICTED: protein SGT1 homolog A-like [Jatropha curcas]
7 Hb_000504_150 0.1104190802 - - PREDICTED: nuclear pore complex protein GP210 [Jatropha curcas]
8 Hb_133047_010 0.1123411754 - - xanthine dehydrogenase, putative [Ricinus communis]
9 Hb_000375_130 0.1139560455 - - Leucine-rich repeat transmembrane protein kinase family protein isoform 1 [Theobroma cacao]
10 Hb_000856_140 0.1142083164 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
11 Hb_000046_180 0.1162162016 - - PREDICTED: uncharacterized protein LOC105631840 [Jatropha curcas]
12 Hb_004974_010 0.1165274467 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Prunus mume]
13 Hb_067193_010 0.1178963573 - - -
14 Hb_001452_220 0.1180367928 - - PREDICTED: molybdopterin biosynthesis protein CNX1 [Jatropha curcas]
15 Hb_001031_040 0.1181728278 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001366_210 0.1192814512 - - cathepsin B, putative [Ricinus communis]
17 Hb_000181_250 0.1193575345 - - PREDICTED: probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [Jatropha curcas]
18 Hb_000011_210 0.119572536 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
19 Hb_003739_030 0.1196940972 - - PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Jatropha curcas]
20 Hb_005143_030 0.1206441736 - - PREDICTED: uncharacterized protein LOC105638843 [Jatropha curcas]

Gene co-expression network

sample Hb_004195_060 Hb_004195_060 Hb_000589_040 Hb_000589_040 Hb_004195_060--Hb_000589_040 Hb_030627_060 Hb_030627_060 Hb_004195_060--Hb_030627_060 Hb_111985_080 Hb_111985_080 Hb_004195_060--Hb_111985_080 Hb_004970_160 Hb_004970_160 Hb_004195_060--Hb_004970_160 Hb_010417_060 Hb_010417_060 Hb_004195_060--Hb_010417_060 Hb_000504_150 Hb_000504_150 Hb_004195_060--Hb_000504_150 Hb_000589_040--Hb_111985_080 Hb_000023_060 Hb_000023_060 Hb_000589_040--Hb_000023_060 Hb_002301_080 Hb_002301_080 Hb_000589_040--Hb_002301_080 Hb_000088_130 Hb_000088_130 Hb_000589_040--Hb_000088_130 Hb_002400_240 Hb_002400_240 Hb_000589_040--Hb_002400_240 Hb_005143_030 Hb_005143_030 Hb_000589_040--Hb_005143_030 Hb_002044_170 Hb_002044_170 Hb_030627_060--Hb_002044_170 Hb_000446_120 Hb_000446_120 Hb_030627_060--Hb_000446_120 Hb_005731_090 Hb_005731_090 Hb_030627_060--Hb_005731_090 Hb_002329_040 Hb_002329_040 Hb_030627_060--Hb_002329_040 Hb_148909_030 Hb_148909_030 Hb_030627_060--Hb_148909_030 Hb_001235_230 Hb_001235_230 Hb_030627_060--Hb_001235_230 Hb_133047_010 Hb_133047_010 Hb_111985_080--Hb_133047_010 Hb_111985_080--Hb_148909_030 Hb_111985_080--Hb_002301_080 Hb_111985_080--Hb_030627_060 Hb_004718_010 Hb_004718_010 Hb_111985_080--Hb_004718_010 Hb_064903_010 Hb_064903_010 Hb_111985_080--Hb_064903_010 Hb_000120_620 Hb_000120_620 Hb_004970_160--Hb_000120_620 Hb_004899_070 Hb_004899_070 Hb_004970_160--Hb_004899_070 Hb_005462_020 Hb_005462_020 Hb_004970_160--Hb_005462_020 Hb_001028_070 Hb_001028_070 Hb_004970_160--Hb_001028_070 Hb_000594_020 Hb_000594_020 Hb_004970_160--Hb_000594_020 Hb_000120_610 Hb_000120_610 Hb_004970_160--Hb_000120_610 Hb_000062_470 Hb_000062_470 Hb_010417_060--Hb_000062_470 Hb_032920_130 Hb_032920_130 Hb_010417_060--Hb_032920_130 Hb_000917_160 Hb_000917_160 Hb_010417_060--Hb_000917_160 Hb_010417_060--Hb_002044_170 Hb_000191_130 Hb_000191_130 Hb_010417_060--Hb_000191_130 Hb_000176_130 Hb_000176_130 Hb_010417_060--Hb_000176_130 Hb_000487_220 Hb_000487_220 Hb_000504_150--Hb_000487_220 Hb_000504_150--Hb_004970_160 Hb_003029_130 Hb_003029_130 Hb_000504_150--Hb_003029_130 Hb_001196_060 Hb_001196_060 Hb_000504_150--Hb_001196_060 Hb_001811_120 Hb_001811_120 Hb_000504_150--Hb_001811_120 Hb_000347_570 Hb_000347_570 Hb_000504_150--Hb_000347_570
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.3956 23.6172 8.06072 13.6897 35.9918 22.8893
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.31221 3.06056 6.06292 23.5731 15.6314

CAGE analysis