Hb_004195_080

Information

Type -
Description -
Location Contig4195: 101214-102485
Sequence    

Annotation

kegg
ID rcu:RCOM_0557800
description cyclin-dependent protein kinase, putative
nr
ID XP_012092244.1
description PREDICTED: cyclin-P3-1 isoform X2 [Jatropha curcas]
swissprot
ID Q8LB60
description Cyclin-U3-1 OS=Arabidopsis thaliana GN=CYCU3-1 PE=1 SV=2
trembl
ID A0A067JPJ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21930 PE=4 SV=1
Gene Ontology
ID GO:0016301
description cyclin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41417: 101381-104985 , PASA_asmbl_41418: 101140-104541
cDNA
(Sanger)
(ID:Location)		 020_N08.ab1: 101381-104985

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004195_080 0.0 - - PREDICTED: cyclin-P3-1 isoform X2 [Jatropha curcas]
2 Hb_000473_020 0.112569552 - - expressed protein, putative [Ricinus communis]
3 Hb_003536_110 0.1348907014 - - PREDICTED: probable small nuclear ribonucleoprotein F [Jatropha curcas]
4 Hb_001865_090 0.1369269853 - - hypothetical protein VITISV_005773 [Vitis vinifera]
5 Hb_000029_070 0.1431064766 - - PREDICTED: cold-inducible RNA-binding protein B-like [Jatropha curcas]
6 Hb_012796_020 0.145187003 - - PREDICTED: ADP-ribosylation factor 1 [Prunus mume]
7 Hb_005867_020 0.1474685714 - - PREDICTED: sm-like protein LSM8 [Jatropha curcas]
8 Hb_001699_100 0.1491371779 - - PREDICTED: calmodulin-lysine N-methyltransferase [Jatropha curcas]
9 Hb_119316_010 0.1498166586 - - tryptophan biosynthesis protein, putative [Ricinus communis]
10 Hb_007113_070 0.1500571486 - - protein with unknown function [Ricinus communis]
11 Hb_001124_020 0.1569414734 - - PREDICTED: protein yippee-like At4g27745 [Jatropha curcas]
12 Hb_154948_040 0.1575413852 - - hypothetical protein B456_013G043800 [Gossypium raimondii]
13 Hb_002960_130 0.1594560672 - - hypothetical protein B456_008G036100 [Gossypium raimondii]
14 Hb_002304_040 0.1607309975 - - PREDICTED: uncharacterized protein LOC105649623 isoform X2 [Jatropha curcas]
15 Hb_002298_030 0.1616202769 - - PREDICTED: coenzyme Q-binding protein COQ10 homolog, mitochondrial [Jatropha curcas]
16 Hb_001747_030 0.1616875434 - - hypothetical protein F383_08210 [Gossypium arboreum]
17 Hb_006618_120 0.1618594309 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
18 Hb_083380_020 0.1629795237 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
19 Hb_001511_260 0.1634569703 - - tryptophan biosynthesis protein, putative [Ricinus communis]
20 Hb_005144_010 0.1651864937 - - PREDICTED: lactoylglutathione lyase [Jatropha curcas]

Gene co-expression network

sample Hb_004195_080 Hb_004195_080 Hb_000473_020 Hb_000473_020 Hb_004195_080--Hb_000473_020 Hb_003536_110 Hb_003536_110 Hb_004195_080--Hb_003536_110 Hb_001865_090 Hb_001865_090 Hb_004195_080--Hb_001865_090 Hb_000029_070 Hb_000029_070 Hb_004195_080--Hb_000029_070 Hb_012796_020 Hb_012796_020 Hb_004195_080--Hb_012796_020 Hb_005867_020 Hb_005867_020 Hb_004195_080--Hb_005867_020 Hb_000473_020--Hb_003536_110 Hb_005667_040 Hb_005667_040 Hb_000473_020--Hb_005667_040 Hb_005000_330 Hb_005000_330 Hb_000473_020--Hb_005000_330 Hb_026314_020 Hb_026314_020 Hb_000473_020--Hb_026314_020 Hb_000359_150 Hb_000359_150 Hb_000473_020--Hb_000359_150 Hb_001538_090 Hb_001538_090 Hb_003536_110--Hb_001538_090 Hb_031089_040 Hb_031089_040 Hb_003536_110--Hb_031089_040 Hb_078185_010 Hb_078185_010 Hb_003536_110--Hb_078185_010 Hb_001699_040 Hb_001699_040 Hb_003536_110--Hb_001699_040 Hb_003536_110--Hb_005867_020 Hb_001865_090--Hb_000029_070 Hb_166574_010 Hb_166574_010 Hb_001865_090--Hb_166574_010 Hb_008147_090 Hb_008147_090 Hb_001865_090--Hb_008147_090 Hb_001754_080 Hb_001754_080 Hb_001865_090--Hb_001754_080 Hb_000120_770 Hb_000120_770 Hb_001865_090--Hb_000120_770 Hb_001489_110 Hb_001489_110 Hb_001865_090--Hb_001489_110 Hb_000029_070--Hb_008147_090 Hb_000768_210 Hb_000768_210 Hb_000029_070--Hb_000768_210 Hb_002518_210 Hb_002518_210 Hb_000029_070--Hb_002518_210 Hb_045003_010 Hb_045003_010 Hb_000029_070--Hb_045003_010 Hb_000127_140 Hb_000127_140 Hb_000029_070--Hb_000127_140 Hb_030736_020 Hb_030736_020 Hb_012796_020--Hb_030736_020 Hb_002053_140 Hb_002053_140 Hb_012796_020--Hb_002053_140 Hb_001699_100 Hb_001699_100 Hb_012796_020--Hb_001699_100 Hb_006618_120 Hb_006618_120 Hb_012796_020--Hb_006618_120 Hb_003929_270 Hb_003929_270 Hb_012796_020--Hb_003929_270 Hb_001124_020 Hb_001124_020 Hb_012796_020--Hb_001124_020 Hb_000083_170 Hb_000083_170 Hb_005867_020--Hb_000083_170 Hb_000479_190 Hb_000479_190 Hb_005867_020--Hb_000479_190 Hb_003502_090 Hb_003502_090 Hb_005867_020--Hb_003502_090 Hb_000326_090 Hb_000326_090 Hb_005867_020--Hb_000326_090 Hb_000656_170 Hb_000656_170 Hb_005867_020--Hb_000656_170 Hb_002207_110 Hb_002207_110 Hb_005867_020--Hb_002207_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.46755 1.6283 10.2361 24.0645 6.01478 14.2536
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.66612 20.5863 10.4844 3.34133 7.22685

CAGE analysis