Hb_004195_100

Information

Type -
Description -
Location Contig4195: 124380-126120
Sequence    

Annotation

kegg
ID sot:102585835
description uncharacterized LOC102585835
nr
ID XP_009613270.1
description PREDICTED: uncharacterized protein LOC104106427 [Nicotiana tomentosiformis]
swissprot
ID Q8DI01
description 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Thermosynechococcus elongatus (strain BP-1) GN=fabZ PE=3 SV=1
trembl
ID D9J166
description Beta-hydroxyacyl-acyl carrier protein dehydratase OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005737
description hydroxyacyl-acp dehydrase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004195_100 0.0 - - PREDICTED: uncharacterized protein LOC104106427 [Nicotiana tomentosiformis]
2 Hb_002928_210 0.1919492279 - - -
3 Hb_005539_210 0.197739295 - - -
4 Hb_006745_060 0.2029941447 - - -
5 Hb_005211_070 0.2031085275 - - PREDICTED: uncharacterized protein LOC105642009 [Jatropha curcas]
6 Hb_001959_260 0.2063104451 - - -
7 Hb_002492_020 0.2278748804 - - PREDICTED: uncharacterized protein LOC104789613 [Camelina sativa]
8 Hb_005214_130 0.2344086316 - - -
9 Hb_065378_010 0.2386188926 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
10 Hb_007409_020 0.2393217069 - - -
11 Hb_000387_060 0.2407994476 - - -
12 Hb_001157_220 0.2415795078 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007576_030 0.2464663868 - - -
14 Hb_092820_010 0.247414661 - - hypothetical protein CISIN_1g033834mg [Citrus sinensis]
15 Hb_029920_040 0.2474751458 - - PREDICTED: uncharacterized protein LOC105635837 [Jatropha curcas]
16 Hb_003211_050 0.2517003766 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
17 Hb_159352_010 0.2529201484 - - hypothetical protein JCGZ_12393 [Jatropha curcas]
18 Hb_000720_190 0.2534388962 - - unknown [Populus trichocarpa x Populus deltoides]
19 Hb_000059_350 0.2546359274 - - glutamate dehydrogenase, putative [Ricinus communis]
20 Hb_012239_100 0.2556359034 - - hypothetical protein VITISV_043897 [Vitis vinifera]

Gene co-expression network

sample Hb_004195_100 Hb_004195_100 Hb_002928_210 Hb_002928_210 Hb_004195_100--Hb_002928_210 Hb_005539_210 Hb_005539_210 Hb_004195_100--Hb_005539_210 Hb_006745_060 Hb_006745_060 Hb_004195_100--Hb_006745_060 Hb_005211_070 Hb_005211_070 Hb_004195_100--Hb_005211_070 Hb_001959_260 Hb_001959_260 Hb_004195_100--Hb_001959_260 Hb_002492_020 Hb_002492_020 Hb_004195_100--Hb_002492_020 Hb_002928_210--Hb_005211_070 Hb_010827_020 Hb_010827_020 Hb_002928_210--Hb_010827_020 Hb_000106_100 Hb_000106_100 Hb_002928_210--Hb_000106_100 Hb_002928_210--Hb_005539_210 Hb_000215_180 Hb_000215_180 Hb_002928_210--Hb_000215_180 Hb_000300_400 Hb_000300_400 Hb_005539_210--Hb_000300_400 Hb_012395_210 Hb_012395_210 Hb_005539_210--Hb_012395_210 Hb_001012_040 Hb_001012_040 Hb_005539_210--Hb_001012_040 Hb_005539_210--Hb_002492_020 Hb_010594_030 Hb_010594_030 Hb_005539_210--Hb_010594_030 Hb_001723_080 Hb_001723_080 Hb_005539_210--Hb_001723_080 Hb_006745_060--Hb_005539_210 Hb_004635_060 Hb_004635_060 Hb_006745_060--Hb_004635_060 Hb_006745_060--Hb_002492_020 Hb_006745_060--Hb_000300_400 Hb_006745_060--Hb_001959_260 Hb_010166_020 Hb_010166_020 Hb_006745_060--Hb_010166_020 Hb_005211_070--Hb_010594_030 Hb_005211_070--Hb_002492_020 Hb_005211_070--Hb_010827_020 Hb_005211_070--Hb_000215_180 Hb_005211_070--Hb_005539_210 Hb_000676_240 Hb_000676_240 Hb_005211_070--Hb_000676_240 Hb_008864_060 Hb_008864_060 Hb_001959_260--Hb_008864_060 Hb_003211_050 Hb_003211_050 Hb_001959_260--Hb_003211_050 Hb_000250_010 Hb_000250_010 Hb_001959_260--Hb_000250_010 Hb_001959_260--Hb_005539_210 Hb_001276_060 Hb_001276_060 Hb_001959_260--Hb_001276_060 Hb_000545_170 Hb_000545_170 Hb_001959_260--Hb_000545_170 Hb_002492_020--Hb_010166_020 Hb_002492_020--Hb_010594_030 Hb_004055_060 Hb_004055_060 Hb_002492_020--Hb_004055_060 Hb_001198_030 Hb_001198_030 Hb_002492_020--Hb_001198_030 Hb_007741_040 Hb_007741_040 Hb_002492_020--Hb_007741_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0705739 0 0 0 0.132953 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.499092 0.392019 0.215034 0.165307 0

CAGE analysis