Hb_004195_120

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig4195: 130860-133391
Sequence    

Annotation

kegg
ID rcu:RCOM_0534550
description Disease resistance protein RGA2, putative (EC:3.1.3.16)
nr
ID XP_002521529.1
description Disease resistance protein RGA2, putative [Ricinus communis]
swissprot
ID Q38834
description Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2
trembl
ID B9S6B0
description Disease resistance protein RGA2, putative OS=Ricinus communis GN=RCOM_0534550 PE=4 SV=1
Gene Ontology
ID GO:0005623
description disease resistance rpp13-like protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41422: 130399-131041 , PASA_asmbl_41423: 131151-134079
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004195_120 0.0 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
2 Hb_002942_110 0.0694627421 transcription factor TF Family: ARF PREDICTED: auxin response factor 2-like [Jatropha curcas]
3 Hb_000227_310 0.0750695872 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]
4 Hb_005649_090 0.080998518 - - PREDICTED: ninja-family protein AFP3-like [Jatropha curcas]
5 Hb_003226_110 0.0846744445 - - PREDICTED: exocyst complex component SEC15B [Jatropha curcas]
6 Hb_004310_040 0.0854224002 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004319_070 0.0855648568 - - hypothetical protein RCOM_0852460 [Ricinus communis]
8 Hb_000866_080 0.088729272 - - PREDICTED: signal peptide peptidase-like 4 isoform X1 [Jatropha curcas]
9 Hb_030545_030 0.0907405123 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
10 Hb_003895_020 0.0949570163 - - PREDICTED: dedicator of cytokinesis protein 7 isoform X2 [Jatropha curcas]
11 Hb_002903_140 0.0953152146 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
12 Hb_000056_300 0.0977124498 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
13 Hb_011249_060 0.098883406 - - hypothetical protein POPTR_0018s12600g [Populus trichocarpa]
14 Hb_003992_180 0.1003729574 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
15 Hb_015183_100 0.1032457276 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
16 Hb_130389_010 0.1041675296 - - PREDICTED: la protein 1 [Jatropha curcas]
17 Hb_005054_310 0.1045970821 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
18 Hb_004526_010 0.1056209313 - - signal recognition particle receptor alpha subunit, putative [Ricinus communis]
19 Hb_002016_060 0.1065288023 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
20 Hb_007017_070 0.108667861 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004195_120 Hb_004195_120 Hb_002942_110 Hb_002942_110 Hb_004195_120--Hb_002942_110 Hb_000227_310 Hb_000227_310 Hb_004195_120--Hb_000227_310 Hb_005649_090 Hb_005649_090 Hb_004195_120--Hb_005649_090 Hb_003226_110 Hb_003226_110 Hb_004195_120--Hb_003226_110 Hb_004310_040 Hb_004310_040 Hb_004195_120--Hb_004310_040 Hb_004319_070 Hb_004319_070 Hb_004195_120--Hb_004319_070 Hb_020178_050 Hb_020178_050 Hb_002942_110--Hb_020178_050 Hb_128695_030 Hb_128695_030 Hb_002942_110--Hb_128695_030 Hb_001369_770 Hb_001369_770 Hb_002942_110--Hb_001369_770 Hb_004324_060 Hb_004324_060 Hb_002942_110--Hb_004324_060 Hb_003895_020 Hb_003895_020 Hb_002942_110--Hb_003895_020 Hb_007017_070 Hb_007017_070 Hb_000227_310--Hb_007017_070 Hb_030545_030 Hb_030545_030 Hb_000227_310--Hb_030545_030 Hb_000926_010 Hb_000926_010 Hb_000227_310--Hb_000926_010 Hb_000264_080 Hb_000264_080 Hb_000227_310--Hb_000264_080 Hb_007576_220 Hb_007576_220 Hb_000227_310--Hb_007576_220 Hb_000056_300 Hb_000056_300 Hb_005649_090--Hb_000056_300 Hb_001009_090 Hb_001009_090 Hb_005649_090--Hb_001009_090 Hb_002903_140 Hb_002903_140 Hb_005649_090--Hb_002903_140 Hb_005649_090--Hb_003226_110 Hb_005649_090--Hb_030545_030 Hb_003226_110--Hb_004310_040 Hb_000866_080 Hb_000866_080 Hb_003226_110--Hb_000866_080 Hb_001484_100 Hb_001484_100 Hb_003226_110--Hb_001484_100 Hb_002477_120 Hb_002477_120 Hb_003226_110--Hb_002477_120 Hb_002016_060 Hb_002016_060 Hb_004310_040--Hb_002016_060 Hb_004310_040--Hb_000866_080 Hb_010661_020 Hb_010661_020 Hb_004310_040--Hb_010661_020 Hb_011249_060 Hb_011249_060 Hb_004310_040--Hb_011249_060 Hb_015183_100 Hb_015183_100 Hb_004310_040--Hb_015183_100 Hb_009486_160 Hb_009486_160 Hb_004319_070--Hb_009486_160 Hb_004319_070--Hb_000227_310 Hb_004526_010 Hb_004526_010 Hb_004319_070--Hb_004526_010 Hb_000189_630 Hb_000189_630 Hb_004319_070--Hb_000189_630 Hb_004319_070--Hb_011249_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.1408 41.7797 21.3883 11.4588 11.7126 11.24
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.9075 3.18131 4.31444 15.1529 8.5427

CAGE analysis