Hb_004195_170

Information

Type -
Description -
Location Contig4195: 162488-164922
Sequence    

Annotation

kegg
ID rcu:RCOM_0534150
description ATP binding protein, putative
nr
ID XP_002521519.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q9P6Q3
description Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1
trembl
ID B9S6A0
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0534150 PE=3 SV=1
Gene Ontology
ID GO:0005524
description probable mitochondrial chaperone bcs1-b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41430: 162488-164960
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004195_170 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_003453_030 0.0879806619 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
3 Hb_000086_370 0.1107575263 - - Long-chain-alcohol oxidase FAO2 [Triticum urartu]
4 Hb_012807_060 0.1184619495 - - ABC transporter family protein [Hevea brasiliensis]
5 Hb_022501_020 0.1256633826 - - AMP dependent CoA ligase, putative [Ricinus communis]
6 Hb_000657_030 0.1262445039 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
7 Hb_001408_050 0.1283299088 - - conserved hypothetical protein [Ricinus communis]
8 Hb_164010_090 0.1291452776 - - cellulose synthase, putative [Ricinus communis]
9 Hb_003430_020 0.1305677296 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
10 Hb_003052_120 0.1347928587 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
11 Hb_000579_180 0.1380843691 transcription factor TF Family: bZIP PREDICTED: ocs element-binding factor 1-like [Jatropha curcas]
12 Hb_002551_090 0.1438340427 - - hypothetical protein JCGZ_17224 [Jatropha curcas]
13 Hb_002783_320 0.1440492596 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FC isoform X1 [Jatropha curcas]
14 Hb_004044_030 0.1442130871 - - PREDICTED: uncharacterized protein LOC105639335 [Jatropha curcas]
15 Hb_000589_180 0.1447114203 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
16 Hb_008406_020 0.1450093612 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
17 Hb_009581_050 0.1466036154 - - hypothetical protein CISIN_1g0025812mg, partial [Citrus sinensis]
18 Hb_001148_040 0.1470561023 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
19 Hb_008226_120 0.1475032057 - - ATP binding protein, putative [Ricinus communis]
20 Hb_006241_010 0.1482370615 desease resistance Gene Name: NB-ARC Disease resistance protein RFL1, putative [Ricinus communis]

Gene co-expression network

sample Hb_004195_170 Hb_004195_170 Hb_003453_030 Hb_003453_030 Hb_004195_170--Hb_003453_030 Hb_000086_370 Hb_000086_370 Hb_004195_170--Hb_000086_370 Hb_012807_060 Hb_012807_060 Hb_004195_170--Hb_012807_060 Hb_022501_020 Hb_022501_020 Hb_004195_170--Hb_022501_020 Hb_000657_030 Hb_000657_030 Hb_004195_170--Hb_000657_030 Hb_001408_050 Hb_001408_050 Hb_004195_170--Hb_001408_050 Hb_003453_030--Hb_001408_050 Hb_003453_030--Hb_012807_060 Hb_003453_030--Hb_022501_020 Hb_001454_410 Hb_001454_410 Hb_003453_030--Hb_001454_410 Hb_009581_050 Hb_009581_050 Hb_003453_030--Hb_009581_050 Hb_000086_370--Hb_000657_030 Hb_000521_300 Hb_000521_300 Hb_000086_370--Hb_000521_300 Hb_000120_980 Hb_000120_980 Hb_000086_370--Hb_000120_980 Hb_000589_180 Hb_000589_180 Hb_000086_370--Hb_000589_180 Hb_000086_370--Hb_012807_060 Hb_012807_060--Hb_009581_050 Hb_003052_120 Hb_003052_120 Hb_012807_060--Hb_003052_120 Hb_002551_090 Hb_002551_090 Hb_012807_060--Hb_002551_090 Hb_000579_180 Hb_000579_180 Hb_012807_060--Hb_000579_180 Hb_003430_020 Hb_003430_020 Hb_012807_060--Hb_003430_020 Hb_008226_120 Hb_008226_120 Hb_012807_060--Hb_008226_120 Hb_006241_010 Hb_006241_010 Hb_022501_020--Hb_006241_010 Hb_022501_020--Hb_012807_060 Hb_022501_020--Hb_002551_090 Hb_004044_030 Hb_004044_030 Hb_022501_020--Hb_004044_030 Hb_006594_060 Hb_006594_060 Hb_022501_020--Hb_006594_060 Hb_009581_040 Hb_009581_040 Hb_000657_030--Hb_009581_040 Hb_000657_030--Hb_003430_020 Hb_000085_230 Hb_000085_230 Hb_000657_030--Hb_000085_230 Hb_000657_030--Hb_000579_180 Hb_009823_010 Hb_009823_010 Hb_001408_050--Hb_009823_010 Hb_000181_160 Hb_000181_160 Hb_001408_050--Hb_000181_160 Hb_001678_030 Hb_001678_030 Hb_001408_050--Hb_001678_030 Hb_003576_050 Hb_003576_050 Hb_001408_050--Hb_003576_050 Hb_000638_090 Hb_000638_090 Hb_001408_050--Hb_000638_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.00855 85.0818 9.46239 32.3541 4.15668 1.61863
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.50141 0.723191 3.263 85.2056 10.0933

CAGE analysis