Hb_004195_200

Information

Type -
Description -
Location Contig4195: 174744-185080
Sequence    

Annotation

kegg
ID cit:102619440
description uncharacterized LOC102619440
nr
ID XP_006383154.1
description glycosyl transferase family 1 family protein [Populus trichocarpa]
swissprot
ID Q9R9N2
description Lipopolysaccharide core biosynthesis mannosyltransferase LpsB OS=Rhizobium meliloti (strain 1021) GN=lpsB PE=3 SV=1
trembl
ID B9MXK7
description Glycosyl transferase family 1 family protein OS=Populus trichocarpa GN=POPTR_0005s12080g PE=4 SV=1
Gene Ontology
ID GO:0016757
description glycosyl transferase family 1 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41431: 174949-175595 , PASA_asmbl_41432: 175596-183098 , PASA_asmbl_41433: 175766-175888 , PASA_asmbl_41434: 176230-176489 , PASA_asmbl_41435: 184302-184870
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004195_200 0.0 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
2 Hb_002375_010 0.0521242514 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
3 Hb_001104_160 0.0533420502 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
4 Hb_007576_110 0.0579314213 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
5 Hb_000366_120 0.0593608549 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
6 Hb_020831_030 0.0601370514 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003640_040 0.0608623967 - - PREDICTED: uncharacterized protein LOC105647348 [Jatropha curcas]
8 Hb_014361_070 0.0621834776 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
9 Hb_002876_130 0.0628409075 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
10 Hb_001195_320 0.0637170447 - - PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Jatropha curcas]
11 Hb_000390_320 0.0638047326 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-1b-like [Jatropha curcas]
12 Hb_002078_110 0.0639734325 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
13 Hb_002835_230 0.0647893598 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
14 Hb_000680_090 0.0652790641 - - Protein SEY1, putative [Ricinus communis]
15 Hb_000923_010 0.0657554164 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
16 Hb_008103_060 0.0665443602 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
17 Hb_000029_300 0.068053937 - - hypothetical protein JCGZ_10048 [Jatropha curcas]
18 Hb_000928_220 0.0684182206 - - PREDICTED: protein SCAI [Jatropha curcas]
19 Hb_000780_230 0.0690890103 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
20 Hb_001195_530 0.069584117 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004195_200 Hb_004195_200 Hb_002375_010 Hb_002375_010 Hb_004195_200--Hb_002375_010 Hb_001104_160 Hb_001104_160 Hb_004195_200--Hb_001104_160 Hb_007576_110 Hb_007576_110 Hb_004195_200--Hb_007576_110 Hb_000366_120 Hb_000366_120 Hb_004195_200--Hb_000366_120 Hb_020831_030 Hb_020831_030 Hb_004195_200--Hb_020831_030 Hb_003640_040 Hb_003640_040 Hb_004195_200--Hb_003640_040 Hb_000390_320 Hb_000390_320 Hb_002375_010--Hb_000390_320 Hb_000347_070 Hb_000347_070 Hb_002375_010--Hb_000347_070 Hb_002375_010--Hb_007576_110 Hb_000617_180 Hb_000617_180 Hb_002375_010--Hb_000617_180 Hb_002784_020 Hb_002784_020 Hb_002375_010--Hb_002784_020 Hb_000289_040 Hb_000289_040 Hb_001104_160--Hb_000289_040 Hb_002835_230 Hb_002835_230 Hb_001104_160--Hb_002835_230 Hb_014361_070 Hb_014361_070 Hb_001104_160--Hb_014361_070 Hb_000402_080 Hb_000402_080 Hb_001104_160--Hb_000402_080 Hb_000696_230 Hb_000696_230 Hb_001104_160--Hb_000696_230 Hb_000789_310 Hb_000789_310 Hb_007576_110--Hb_000789_310 Hb_007576_110--Hb_000366_120 Hb_007576_110--Hb_014361_070 Hb_000190_120 Hb_000190_120 Hb_007576_110--Hb_000190_120 Hb_001409_020 Hb_001409_020 Hb_007576_110--Hb_001409_020 Hb_021409_040 Hb_021409_040 Hb_000366_120--Hb_021409_040 Hb_014497_050 Hb_014497_050 Hb_000366_120--Hb_014497_050 Hb_000366_120--Hb_001409_020 Hb_000366_120--Hb_000789_310 Hb_001195_530 Hb_001195_530 Hb_020831_030--Hb_001195_530 Hb_020831_030--Hb_003640_040 Hb_002056_090 Hb_002056_090 Hb_020831_030--Hb_002056_090 Hb_000049_260 Hb_000049_260 Hb_020831_030--Hb_000049_260 Hb_013399_100 Hb_013399_100 Hb_020831_030--Hb_013399_100 Hb_003640_040--Hb_002056_090 Hb_003640_040--Hb_001195_530 Hb_000680_090 Hb_000680_090 Hb_003640_040--Hb_000680_090 Hb_000070_080 Hb_000070_080 Hb_003640_040--Hb_000070_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3599 15.3703 9.56883 11.4311 17.1061 13.9333
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.04235 10.3951 11.5034 12.1906 7.63817

CAGE analysis