Hb_004195_210

Information

Type -
Description -
Location Contig4195: 185431-186088
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004195_210 0.0 - - -
2 Hb_002207_110 0.0893885917 - - -
3 Hb_000003_730 0.1049679413 - - DNA repair/transcription protein met18/mms19, putative [Ricinus communis]
4 Hb_004032_010 0.1106518863 - - PREDICTED: uncharacterized protein LOC105635123 [Jatropha curcas]
5 Hb_031089_040 0.1122098509 - - thioredoxin H-type 1 [Hevea brasiliensis]
6 Hb_000684_230 0.1125485729 - - 40S ribosomal protein S23, putative [Ricinus communis]
7 Hb_004032_100 0.1187319172 - - PREDICTED: regulator of nonsense transcripts UPF3-like [Jatropha curcas]
8 Hb_000707_030 0.1205135506 - - PREDICTED: probable proteasome inhibitor [Vitis vinifera]
9 Hb_000505_140 0.1215878364 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Populus euphratica]
10 Hb_000230_540 0.1220170722 - - PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Sesamum indicum]
11 Hb_000085_320 0.1223635915 - - Uncharacterized protein TCM_030749 [Theobroma cacao]
12 Hb_004545_060 0.1233024263 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
13 Hb_004502_020 0.1239277077 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
14 Hb_000152_550 0.1243228764 - - PREDICTED: UMP-CMP kinase [Vitis vinifera]
15 Hb_000690_180 0.1255421215 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 13 homolog B [Jatropha curcas]
16 Hb_009265_070 0.1262424349 - - PREDICTED: uncharacterized protein LOC105649623 isoform X1 [Jatropha curcas]
17 Hb_000340_300 0.1264110154 - - methyl-CpG-binding domain-containing family protein [Populus trichocarpa]
18 Hb_000656_170 0.1266714285 - - lsm1, putative [Ricinus communis]
19 Hb_001247_350 0.126745048 - - PREDICTED: anaphase-promoting complex subunit 11 [Jatropha curcas]
20 Hb_005867_020 0.126810984 - - PREDICTED: sm-like protein LSM8 [Jatropha curcas]

Gene co-expression network

sample Hb_004195_210 Hb_004195_210 Hb_002207_110 Hb_002207_110 Hb_004195_210--Hb_002207_110 Hb_000003_730 Hb_000003_730 Hb_004195_210--Hb_000003_730 Hb_004032_010 Hb_004032_010 Hb_004195_210--Hb_004032_010 Hb_031089_040 Hb_031089_040 Hb_004195_210--Hb_031089_040 Hb_000684_230 Hb_000684_230 Hb_004195_210--Hb_000684_230 Hb_004032_100 Hb_004032_100 Hb_004195_210--Hb_004032_100 Hb_012799_160 Hb_012799_160 Hb_002207_110--Hb_012799_160 Hb_002207_110--Hb_004032_010 Hb_004306_020 Hb_004306_020 Hb_002207_110--Hb_004306_020 Hb_002207_110--Hb_031089_040 Hb_000152_550 Hb_000152_550 Hb_002207_110--Hb_000152_550 Hb_012022_120 Hb_012022_120 Hb_002207_110--Hb_012022_120 Hb_007441_270 Hb_007441_270 Hb_000003_730--Hb_007441_270 Hb_000003_730--Hb_004032_100 Hb_000003_730--Hb_031089_040 Hb_000003_730--Hb_000684_230 Hb_002296_040 Hb_002296_040 Hb_000003_730--Hb_002296_040 Hb_004502_020 Hb_004502_020 Hb_000003_730--Hb_004502_020 Hb_002226_070 Hb_002226_070 Hb_004032_010--Hb_002226_070 Hb_000656_170 Hb_000656_170 Hb_004032_010--Hb_000656_170 Hb_033834_040 Hb_033834_040 Hb_004032_010--Hb_033834_040 Hb_000690_180 Hb_000690_180 Hb_004032_010--Hb_000690_180 Hb_005045_060 Hb_005045_060 Hb_004032_010--Hb_005045_060 Hb_003108_020 Hb_003108_020 Hb_004032_010--Hb_003108_020 Hb_066768_010 Hb_066768_010 Hb_031089_040--Hb_066768_010 Hb_004784_020 Hb_004784_020 Hb_031089_040--Hb_004784_020 Hb_031089_040--Hb_002296_040 Hb_031089_040--Hb_004502_020 Hb_008173_120 Hb_008173_120 Hb_000684_230--Hb_008173_120 Hb_007193_100 Hb_007193_100 Hb_000684_230--Hb_007193_100 Hb_000024_080 Hb_000024_080 Hb_000684_230--Hb_000024_080 Hb_007317_060 Hb_007317_060 Hb_000684_230--Hb_007317_060 Hb_000103_140 Hb_000103_140 Hb_000684_230--Hb_000103_140 Hb_004032_100--Hb_000024_080 Hb_000087_020 Hb_000087_020 Hb_004032_100--Hb_000087_020 Hb_000751_130 Hb_000751_130 Hb_004032_100--Hb_000751_130 Hb_180301_010 Hb_180301_010 Hb_004032_100--Hb_180301_010 Hb_000787_140 Hb_000787_140 Hb_004032_100--Hb_000787_140 Hb_000085_320 Hb_000085_320 Hb_004032_100--Hb_000085_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.98893 1.25731 2.86596 4.70044 5.7983 9.17876
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.69944 10.8487 5.69648 2.23673 1.48736

CAGE analysis