Hb_004195_230

Information

Type -
Description -
Location Contig4195: 187952-190353
Sequence    

Annotation

kegg
ID rcu:RCOM_0533490
description hypothetical protein
nr
ID XP_002521513.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S694
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0533490 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41436: 189346-189661
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004195_230 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000868_050 0.1754213274 - - RAD51 homolog [Populus nigra]
3 Hb_066913_010 0.1782038809 - - hypothetical protein POPTR_0006s03150g [Populus trichocarpa]
4 Hb_179812_010 0.1794977871 - - TdcA1-ORF1-ORF2 [Daucus carota]
5 Hb_004669_030 0.1877566457 - - -
6 Hb_000789_150 0.1955254562 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
7 Hb_002388_010 0.1958769022 - - -
8 Hb_002192_090 0.1974884276 - - hypothetical protein AMTR_s00029p00055000 [Amborella trichopoda]
9 Hb_090158_010 0.1990289909 - - hypothetical protein RCOM_1968400 [Ricinus communis]
10 Hb_002687_080 0.2066091497 - - hypothetical protein JCGZ_06535 [Jatropha curcas]
11 Hb_182713_020 0.2109837603 - - PREDICTED: vesicle-associated membrane protein 727 [Setaria italica]
12 Hb_000243_040 0.211153314 - - -
13 Hb_000635_070 0.2117485552 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
14 Hb_009270_030 0.2119991537 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
15 Hb_003925_070 0.2147325269 - - ATOZI1, putative [Ricinus communis]
16 Hb_150766_020 0.2169233285 - - hypothetical protein VITISV_030841 [Vitis vinifera]
17 Hb_146675_010 0.2169235769 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier-like isoform X2 [Malus domestica]
18 Hb_116596_010 0.2179001635 - - PREDICTED: probable receptor-like protein kinase At5g47070-like isoform X1 [Citrus sinensis]
19 Hb_002508_010 0.221502072 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
20 Hb_088163_010 0.223112214 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]

Gene co-expression network

sample Hb_004195_230 Hb_004195_230 Hb_000868_050 Hb_000868_050 Hb_004195_230--Hb_000868_050 Hb_066913_010 Hb_066913_010 Hb_004195_230--Hb_066913_010 Hb_179812_010 Hb_179812_010 Hb_004195_230--Hb_179812_010 Hb_004669_030 Hb_004669_030 Hb_004195_230--Hb_004669_030 Hb_000789_150 Hb_000789_150 Hb_004195_230--Hb_000789_150 Hb_002388_010 Hb_002388_010 Hb_004195_230--Hb_002388_010 Hb_000916_070 Hb_000916_070 Hb_000868_050--Hb_000916_070 Hb_003001_090 Hb_003001_090 Hb_000868_050--Hb_003001_090 Hb_026549_010 Hb_026549_010 Hb_000868_050--Hb_026549_010 Hb_090158_010 Hb_090158_010 Hb_000868_050--Hb_090158_010 Hb_002490_010 Hb_002490_010 Hb_000868_050--Hb_002490_010 Hb_066913_010--Hb_002388_010 Hb_002687_080 Hb_002687_080 Hb_066913_010--Hb_002687_080 Hb_133724_010 Hb_133724_010 Hb_066913_010--Hb_133724_010 Hb_002192_090 Hb_002192_090 Hb_066913_010--Hb_002192_090 Hb_000363_330 Hb_000363_330 Hb_066913_010--Hb_000363_330 Hb_145629_010 Hb_145629_010 Hb_066913_010--Hb_145629_010 Hb_005542_090 Hb_005542_090 Hb_179812_010--Hb_005542_090 Hb_179812_010--Hb_002388_010 Hb_179812_010--Hb_002687_080 Hb_178620_010 Hb_178620_010 Hb_179812_010--Hb_178620_010 Hb_150766_020 Hb_150766_020 Hb_179812_010--Hb_150766_020 Hb_000671_120 Hb_000671_120 Hb_004669_030--Hb_000671_120 Hb_000635_070 Hb_000635_070 Hb_004669_030--Hb_000635_070 Hb_001233_020 Hb_001233_020 Hb_004669_030--Hb_001233_020 Hb_132180_010 Hb_132180_010 Hb_004669_030--Hb_132180_010 Hb_001220_010 Hb_001220_010 Hb_004669_030--Hb_001220_010 Hb_002562_110 Hb_002562_110 Hb_004669_030--Hb_002562_110 Hb_012675_080 Hb_012675_080 Hb_000789_150--Hb_012675_080 Hb_013394_100 Hb_013394_100 Hb_000789_150--Hb_013394_100 Hb_108227_010 Hb_108227_010 Hb_000789_150--Hb_108227_010 Hb_000015_070 Hb_000015_070 Hb_000789_150--Hb_000015_070 Hb_001396_250 Hb_001396_250 Hb_000789_150--Hb_001396_250 Hb_000789_150--Hb_000671_120 Hb_000111_030 Hb_000111_030 Hb_002388_010--Hb_000111_030 Hb_002388_010--Hb_002192_090 Hb_002388_010--Hb_133724_010 Hb_073799_010 Hb_073799_010 Hb_002388_010--Hb_073799_010 Hb_003551_010 Hb_003551_010 Hb_002388_010--Hb_003551_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.486119 0.419155 1.75532 6.11723 2.18003 4.22789
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.5445 1.63558 0.850864 0.950464 0

CAGE analysis