Hb_004195_270

Information

Type -
Description -
Location Contig4195: 204564-208785
Sequence    

Annotation

kegg
ID tcc:TCM_000290
description Ubiquitin-conjugating enzyme 16
nr
ID XP_007046806.1
description Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
swissprot
ID Q9FWT2
description Probable ubiquitin-conjugating enzyme E2 16 OS=Arabidopsis thaliana GN=UBC16 PE=2 SV=1
trembl
ID A0A061DLV4
description Ubiquitin-conjugating enzyme 16 OS=Theobroma cacao GN=TCM_000290 PE=3 SV=1
Gene Ontology
ID GO:0016874
description probable ubiquitin-conjugating enzyme e2 16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41441: 204533-208865 , PASA_asmbl_41442: 207803-207954
cDNA
(Sanger)
(ID:Location)		 044_F07.ab1: 204798-208865

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004195_270 0.0 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
2 Hb_010222_020 0.0685991078 - - PREDICTED: uncharacterized protein LOC105647642 [Jatropha curcas]
3 Hb_000205_090 0.0699590127 - - hypothetical protein POPTR_0019s03570g [Populus trichocarpa]
4 Hb_118419_010 0.0704034285 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
5 Hb_000787_050 0.0744888083 - - PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]
6 Hb_002490_020 0.0750849224 - - peptidyl-tRNA hydrolase family protein [Populus trichocarpa]
7 Hb_001268_420 0.0782569484 - - PREDICTED: uncharacterized protein LOC105630158 [Jatropha curcas]
8 Hb_001604_060 0.0810587474 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
9 Hb_002685_040 0.0878237388 - - hypothetical protein CICLE_v10017252mg [Citrus clementina]
10 Hb_032264_070 0.087917377 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
11 Hb_004109_170 0.0887989305 - - PREDICTED: probable ribokinase [Jatropha curcas]
12 Hb_002600_090 0.0902658945 - - ATP binding protein, putative [Ricinus communis]
13 Hb_001662_070 0.0917416186 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
14 Hb_001427_200 0.0921798085 - - PREDICTED: uncharacterized protein LOC105637796 [Jatropha curcas]
15 Hb_003607_050 0.0926799277 - - PREDICTED: uncharacterized protein LOC105644428 [Jatropha curcas]
16 Hb_001105_030 0.0931265428 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
17 Hb_003749_010 0.0944179924 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001195_480 0.0947916357 - - cop9 complex subunit, putative [Ricinus communis]
19 Hb_002799_110 0.0948553933 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
20 Hb_012114_070 0.0950965975 - - PREDICTED: uncharacterized protein LOC105645812 [Jatropha curcas]

Gene co-expression network

sample Hb_004195_270 Hb_004195_270 Hb_010222_020 Hb_010222_020 Hb_004195_270--Hb_010222_020 Hb_000205_090 Hb_000205_090 Hb_004195_270--Hb_000205_090 Hb_118419_010 Hb_118419_010 Hb_004195_270--Hb_118419_010 Hb_000787_050 Hb_000787_050 Hb_004195_270--Hb_000787_050 Hb_002490_020 Hb_002490_020 Hb_004195_270--Hb_002490_020 Hb_001268_420 Hb_001268_420 Hb_004195_270--Hb_001268_420 Hb_000815_320 Hb_000815_320 Hb_010222_020--Hb_000815_320 Hb_009694_010 Hb_009694_010 Hb_010222_020--Hb_009694_010 Hb_004096_090 Hb_004096_090 Hb_010222_020--Hb_004096_090 Hb_001195_480 Hb_001195_480 Hb_010222_020--Hb_001195_480 Hb_000053_110 Hb_000053_110 Hb_010222_020--Hb_000053_110 Hb_004109_170 Hb_004109_170 Hb_000205_090--Hb_004109_170 Hb_010098_050 Hb_010098_050 Hb_000205_090--Hb_010098_050 Hb_000205_090--Hb_118419_010 Hb_000236_040 Hb_000236_040 Hb_000205_090--Hb_000236_040 Hb_000656_240 Hb_000656_240 Hb_000205_090--Hb_000656_240 Hb_004116_190 Hb_004116_190 Hb_000205_090--Hb_004116_190 Hb_118419_010--Hb_004109_170 Hb_000580_090 Hb_000580_090 Hb_118419_010--Hb_000580_090 Hb_001105_030 Hb_001105_030 Hb_118419_010--Hb_001105_030 Hb_118419_010--Hb_000815_320 Hb_001662_070 Hb_001662_070 Hb_000787_050--Hb_001662_070 Hb_002835_240 Hb_002835_240 Hb_000787_050--Hb_002835_240 Hb_025645_010 Hb_025645_010 Hb_000787_050--Hb_025645_010 Hb_000331_080 Hb_000331_080 Hb_000787_050--Hb_000331_080 Hb_000787_050--Hb_118419_010 Hb_000329_320 Hb_000329_320 Hb_002490_020--Hb_000329_320 Hb_003747_200 Hb_003747_200 Hb_002490_020--Hb_003747_200 Hb_002490_020--Hb_010222_020 Hb_002141_030 Hb_002141_030 Hb_002490_020--Hb_002141_030 Hb_002600_090 Hb_002600_090 Hb_002490_020--Hb_002600_090 Hb_001604_060 Hb_001604_060 Hb_001268_420--Hb_001604_060 Hb_001427_200 Hb_001427_200 Hb_001268_420--Hb_001427_200 Hb_032264_070 Hb_032264_070 Hb_001268_420--Hb_032264_070 Hb_001268_420--Hb_001105_030 Hb_028872_080 Hb_028872_080 Hb_001268_420--Hb_028872_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.3798 17.2934 39.2729 22.6067 29.2949 23.2173
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.5136 54.8193 41.4983 18.3109 31.0001

CAGE analysis