Hb_004195_280

Information

Type -
Description -
Location Contig4195: 214335-219526
Sequence    

Annotation

kegg
ID vvi:100266017
description CDK5RAP1-like protein
nr
ID XP_012078408.1
description PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
swissprot
ID Q2R1U4
description CDK5RAP1-like protein OS=Oryza sativa subsp. japonica GN=Os11g0592800 PE=2 SV=1
trembl
ID A0A067KLL7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13682 PE=4 SV=1
Gene Ontology
ID GO:0016740
description cdk5rap1-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41443: 214412-214537 , PASA_asmbl_41444: 217662-217915
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004195_280 0.0 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
2 Hb_002174_060 0.0504477477 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
3 Hb_010423_020 0.0543697793 - - PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Jatropha curcas]
4 Hb_009265_080 0.0628431338 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
5 Hb_171900_100 0.0678510834 - - PREDICTED: putative uncharacterized protein DDB_G0270496 [Jatropha curcas]
6 Hb_003006_060 0.072564608 - - PREDICTED: pre-mRNA-splicing factor syf2 [Jatropha curcas]
7 Hb_000179_020 0.0733018527 - - amidase, putative [Ricinus communis]
8 Hb_007407_040 0.0760973222 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_000184_110 0.0765877121 - - hypothetical protein F383_18769 [Gossypium arboreum]
10 Hb_002097_090 0.07990751 - - Splicing factor 3A subunit, putative [Ricinus communis]
11 Hb_000364_060 0.0802208877 - - JHL03K20.4 [Jatropha curcas]
12 Hb_000684_420 0.0824808916 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
13 Hb_003434_060 0.0825698418 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
14 Hb_004198_010 0.082602269 - - Eukaryotic translation initiation factor 2 subunit beta [Theobroma cacao]
15 Hb_000803_300 0.0832963518 - - nuclear movement protein nudc, putative [Ricinus communis]
16 Hb_000956_030 0.0841510995 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
17 Hb_002400_180 0.0856312861 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000076_080 0.0863375118 - - PREDICTED: protein MOS2 [Jatropha curcas]
19 Hb_011794_060 0.0871063055 - - PREDICTED: beta-amylase 2, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_001437_100 0.0876443048 - - PREDICTED: DNA-binding protein REB1-like [Jatropha curcas]

Gene co-expression network

sample Hb_004195_280 Hb_004195_280 Hb_002174_060 Hb_002174_060 Hb_004195_280--Hb_002174_060 Hb_010423_020 Hb_010423_020 Hb_004195_280--Hb_010423_020 Hb_009265_080 Hb_009265_080 Hb_004195_280--Hb_009265_080 Hb_171900_100 Hb_171900_100 Hb_004195_280--Hb_171900_100 Hb_003006_060 Hb_003006_060 Hb_004195_280--Hb_003006_060 Hb_000179_020 Hb_000179_020 Hb_004195_280--Hb_000179_020 Hb_002174_060--Hb_000179_020 Hb_000364_060 Hb_000364_060 Hb_002174_060--Hb_000364_060 Hb_002174_060--Hb_010423_020 Hb_001866_110 Hb_001866_110 Hb_002174_060--Hb_001866_110 Hb_000184_110 Hb_000184_110 Hb_002174_060--Hb_000184_110 Hb_010423_020--Hb_003006_060 Hb_010423_020--Hb_009265_080 Hb_010423_020--Hb_000364_060 Hb_134364_010 Hb_134364_010 Hb_010423_020--Hb_134364_010 Hb_002007_350 Hb_002007_350 Hb_009265_080--Hb_002007_350 Hb_008253_010 Hb_008253_010 Hb_009265_080--Hb_008253_010 Hb_004678_060 Hb_004678_060 Hb_009265_080--Hb_004678_060 Hb_002400_180 Hb_002400_180 Hb_009265_080--Hb_002400_180 Hb_000803_300 Hb_000803_300 Hb_009265_080--Hb_000803_300 Hb_143629_010 Hb_143629_010 Hb_171900_100--Hb_143629_010 Hb_031939_010 Hb_031939_010 Hb_171900_100--Hb_031939_010 Hb_008887_050 Hb_008887_050 Hb_171900_100--Hb_008887_050 Hb_000236_320 Hb_000236_320 Hb_171900_100--Hb_000236_320 Hb_171900_100--Hb_002007_350 Hb_002942_080 Hb_002942_080 Hb_003006_060--Hb_002942_080 Hb_003006_060--Hb_004678_060 Hb_000104_080 Hb_000104_080 Hb_003006_060--Hb_000104_080 Hb_008143_030 Hb_008143_030 Hb_003006_060--Hb_008143_030 Hb_003006_060--Hb_009265_080 Hb_011794_060 Hb_011794_060 Hb_000179_020--Hb_011794_060 Hb_002079_010 Hb_002079_010 Hb_000179_020--Hb_002079_010 Hb_000889_020 Hb_000889_020 Hb_000179_020--Hb_000889_020 Hb_000179_020--Hb_001866_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.1262 3.88034 4.57001 2.63123 14.0447 17.8276
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.75487 6.43024 6.20523 5.00142 5.03928

CAGE analysis