Hb_004200_020

Information

Type -
Description -
Location Contig4200: 35812-38007
Sequence    

Annotation

kegg
ID vvi:104878039
description uncharacterized LOC104878039
nr
ID XP_010646031.1
description PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID B9R6V1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1585960 PE=4 SV=1
Gene Ontology
ID GO:0003676
description hypothetical protein VITISV_011880

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 003_N21.ab1: 38435-38584 , 003_O17.ab1: 38435-38584

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004200_020 0.0 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
2 Hb_022250_090 0.1141364795 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Jatropha curcas]
3 Hb_000213_100 0.117803882 - - PREDICTED: pentatricopeptide repeat-containing protein At1g79540-like [Jatropha curcas]
4 Hb_002918_180 0.1249613784 - - hypothetical protein POPTR_0004s04740g [Populus trichocarpa]
5 Hb_002577_010 0.1378902187 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
6 Hb_002218_010 0.1448437875 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
7 Hb_000680_050 0.1487853541 - - hypothetical protein JCGZ_24767 [Jatropha curcas]
8 Hb_000116_010 0.1499169397 - - isocitrate dehydrogenase, putative [Ricinus communis]
9 Hb_074783_010 0.1534673482 - - PREDICTED: uncharacterized protein LOC105649970 [Jatropha curcas]
10 Hb_000033_020 0.1560903415 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_001473_040 0.1562374352 - - serine/threonine protein kinase, putative [Ricinus communis]
12 Hb_000318_330 0.1568773483 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15630, mitochondrial [Jatropha curcas]
13 Hb_003647_060 0.1585400033 - - PREDICTED: uncharacterized protein LOC105646679 isoform X2 [Jatropha curcas]
14 Hb_001856_200 0.1594782679 - - Esterase PIR7B, putative [Ricinus communis]
15 Hb_001053_090 0.1599915861 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 30-like [Jatropha curcas]
16 Hb_000392_310 0.1609448337 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005188_020 0.1613828647 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02330 [Jatropha curcas]
18 Hb_000367_260 0.161401566 - - PREDICTED: uncharacterized protein LOC105640585 [Jatropha curcas]
19 Hb_000307_030 0.1625944531 - - PREDICTED: pentatricopeptide repeat-containing protein At5g40410, mitochondrial [Jatropha curcas]
20 Hb_010874_020 0.163026186 - - PREDICTED: uncharacterized protein LOC105636745 [Jatropha curcas]

Gene co-expression network

sample Hb_004200_020 Hb_004200_020 Hb_022250_090 Hb_022250_090 Hb_004200_020--Hb_022250_090 Hb_000213_100 Hb_000213_100 Hb_004200_020--Hb_000213_100 Hb_002918_180 Hb_002918_180 Hb_004200_020--Hb_002918_180 Hb_002577_010 Hb_002577_010 Hb_004200_020--Hb_002577_010 Hb_002218_010 Hb_002218_010 Hb_004200_020--Hb_002218_010 Hb_000680_050 Hb_000680_050 Hb_004200_020--Hb_000680_050 Hb_022250_090--Hb_000213_100 Hb_000206_240 Hb_000206_240 Hb_022250_090--Hb_000206_240 Hb_002276_130 Hb_002276_130 Hb_022250_090--Hb_002276_130 Hb_022250_090--Hb_002218_010 Hb_000230_390 Hb_000230_390 Hb_022250_090--Hb_000230_390 Hb_003371_090 Hb_003371_090 Hb_022250_090--Hb_003371_090 Hb_000213_100--Hb_003371_090 Hb_000213_100--Hb_002218_010 Hb_000213_100--Hb_000206_240 Hb_007532_030 Hb_007532_030 Hb_000213_100--Hb_007532_030 Hb_007508_090 Hb_007508_090 Hb_000213_100--Hb_007508_090 Hb_002235_040 Hb_002235_040 Hb_002918_180--Hb_002235_040 Hb_002316_150 Hb_002316_150 Hb_002918_180--Hb_002316_150 Hb_000866_120 Hb_000866_120 Hb_002918_180--Hb_000866_120 Hb_029142_050 Hb_029142_050 Hb_002918_180--Hb_029142_050 Hb_001999_090 Hb_001999_090 Hb_002918_180--Hb_001999_090 Hb_002918_180--Hb_022250_090 Hb_074783_010 Hb_074783_010 Hb_002577_010--Hb_074783_010 Hb_004328_040 Hb_004328_040 Hb_002577_010--Hb_004328_040 Hb_003647_060 Hb_003647_060 Hb_002577_010--Hb_003647_060 Hb_000007_140 Hb_000007_140 Hb_002577_010--Hb_000007_140 Hb_165669_010 Hb_165669_010 Hb_002577_010--Hb_165669_010 Hb_002218_010--Hb_007532_030 Hb_005348_140 Hb_005348_140 Hb_002218_010--Hb_005348_140 Hb_009178_030 Hb_009178_030 Hb_002218_010--Hb_009178_030 Hb_000343_130 Hb_000343_130 Hb_002218_010--Hb_000343_130 Hb_004052_090 Hb_004052_090 Hb_002218_010--Hb_004052_090 Hb_168697_010 Hb_168697_010 Hb_000680_050--Hb_168697_010 Hb_001141_390 Hb_001141_390 Hb_000680_050--Hb_001141_390 Hb_048219_010 Hb_048219_010 Hb_000680_050--Hb_048219_010 Hb_012395_220 Hb_012395_220 Hb_000680_050--Hb_012395_220 Hb_002813_050 Hb_002813_050 Hb_000680_050--Hb_002813_050 Hb_005015_070 Hb_005015_070 Hb_000680_050--Hb_005015_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.746851 1.01935 0.170414 0.364061 0.242408 0.199394
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.361063 0.653285 1.38031 0.499786 0.35452

CAGE analysis