Hb_004200_030

Information

Type -
Description -
Location Contig4200: 38458-39525
Sequence    

Annotation

kegg
ID cit:102616629
description SWR1 complex subunit 6-like
nr
ID XP_006488595.1
description PREDICTED: SWR1 complex subunit 6-like isoform X1 [Citrus sinensis]
swissprot
ID Q9FHW2
description SWR1 complex subunit 6 OS=Arabidopsis thaliana GN=SWC6 PE=1 SV=1
trembl
ID A0A067FI10
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g045528mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004200_030 0.0 - - PREDICTED: SWR1 complex subunit 6-like isoform X1 [Citrus sinensis]
2 Hb_007386_010 0.1210046017 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
3 Hb_002259_140 0.1374869154 - - -
4 Hb_021906_010 0.1685406986 - - PREDICTED: cysteine proteinase inhibitor-like [Populus euphratica]
5 Hb_004097_040 0.1918734793 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
6 Hb_044555_010 0.2018274455 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
7 Hb_002081_170 0.2134242678 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
8 Hb_101319_020 0.2301428198 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
9 Hb_003120_100 0.2312990223 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
10 Hb_000136_160 0.2478045147 - - calmodulin binding protein, putative [Ricinus communis]
11 Hb_006376_010 0.2570249354 - - PREDICTED: uncharacterized protein LOC104090718 [Nicotiana tomentosiformis]
12 Hb_004241_010 0.2591060199 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
13 Hb_002099_010 0.2595826534 - - cysteine proteinase inhibitor 5-like [Cucumis sativus]
14 Hb_001584_030 0.2729219659 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like [Nelumbo nucifera]
15 Hb_002874_020 0.2794336559 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105637459 isoform X1 [Jatropha curcas]
16 Hb_033594_070 0.2834314794 - - PREDICTED: uncharacterized protein LOC105787685 isoform X1 [Gossypium raimondii]
17 Hb_001911_070 0.2849962277 - - -
18 Hb_032974_010 0.3000662041 - - -
19 Hb_000205_200 0.3072112176 - - -
20 Hb_002157_090 0.3079638449 - - hypothetical protein VITISV_041741 [Vitis vinifera]

Gene co-expression network

sample Hb_004200_030 Hb_004200_030 Hb_007386_010 Hb_007386_010 Hb_004200_030--Hb_007386_010 Hb_002259_140 Hb_002259_140 Hb_004200_030--Hb_002259_140 Hb_021906_010 Hb_021906_010 Hb_004200_030--Hb_021906_010 Hb_004097_040 Hb_004097_040 Hb_004200_030--Hb_004097_040 Hb_044555_010 Hb_044555_010 Hb_004200_030--Hb_044555_010 Hb_002081_170 Hb_002081_170 Hb_004200_030--Hb_002081_170 Hb_007386_010--Hb_021906_010 Hb_002099_010 Hb_002099_010 Hb_007386_010--Hb_002099_010 Hb_007386_010--Hb_002259_140 Hb_007386_010--Hb_004097_040 Hb_007386_010--Hb_044555_010 Hb_002259_140--Hb_021906_010 Hb_002259_140--Hb_004097_040 Hb_001911_070 Hb_001911_070 Hb_002259_140--Hb_001911_070 Hb_004241_010 Hb_004241_010 Hb_002259_140--Hb_004241_010 Hb_021906_010--Hb_002099_010 Hb_021906_010--Hb_004097_040 Hb_000175_580 Hb_000175_580 Hb_021906_010--Hb_000175_580 Hb_006376_010 Hb_006376_010 Hb_004097_040--Hb_006376_010 Hb_000136_160 Hb_000136_160 Hb_004097_040--Hb_000136_160 Hb_004097_040--Hb_044555_010 Hb_044555_010--Hb_002081_170 Hb_001979_030 Hb_001979_030 Hb_044555_010--Hb_001979_030 Hb_044555_010--Hb_000136_160 Hb_002081_170--Hb_004097_040 Hb_001563_020 Hb_001563_020 Hb_002081_170--Hb_001563_020 Hb_033594_070 Hb_033594_070 Hb_002081_170--Hb_033594_070 Hb_002081_170--Hb_007386_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0617728 0.136649 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.186704 0.146647 0 0 0

CAGE analysis