Hb_004200_040

Information

Type -
Description -
Location Contig4200: 40106-42527
Sequence    

Annotation

kegg
ID rcu:RCOM_1402420
description laccase, putative (EC:1.10.3.3)
nr
ID XP_002516345.1
description laccase, putative [Ricinus communis]
swissprot
ID Q56YT0
description Laccase-3 OS=Arabidopsis thaliana GN=LAC3 PE=2 SV=2
trembl
ID B9RRH6
description Laccase OS=Ricinus communis GN=RCOM_1402420 PE=3 SV=1
Gene Ontology
ID GO:0048046
description laccase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41501: 41666-41855 , PASA_asmbl_41502: 42043-42536
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004200_040 0.0 - - laccase, putative [Ricinus communis]
2 Hb_000140_260 0.0466883008 - - PREDICTED: uncharacterized protein LOC105642920 [Jatropha curcas]
3 Hb_000205_210 0.0578487635 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
4 Hb_003900_050 0.063542521 transcription factor TF Family: HSF Heat Stress Transcription Factor family protein [Populus trichocarpa]
5 Hb_004463_040 0.0797975411 - - -
6 Hb_027141_010 0.0805433986 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
7 Hb_000684_020 0.0935135425 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
8 Hb_076895_020 0.0973955465 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]
9 Hb_000984_080 0.10105393 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
10 Hb_000539_080 0.1040620807 - - hypothetical protein POPTR_0039s00260g, partial [Populus trichocarpa]
11 Hb_000081_020 0.1089757411 - - PREDICTED: protein NRT1/ PTR FAMILY 1.1-like [Camelina sativa]
12 Hb_004190_010 0.1130468307 - - unnamed protein product [Vitis vinifera]
13 Hb_020332_040 0.1137108668 - - PREDICTED: alcohol dehydrogenase 1-like [Jatropha curcas]
14 Hb_004881_060 0.1154504658 transcription factor TF Family: WRKY hypothetical protein POPTR_0005s22480g [Populus trichocarpa]
15 Hb_009012_020 0.1223682782 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like [Populus euphratica]
16 Hb_000497_120 0.124378032 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002110_270 0.1248368714 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH96 [Jatropha curcas]
18 Hb_110218_010 0.1252917616 - - PREDICTED: uncharacterized protein LOC104428128 [Eucalyptus grandis]
19 Hb_005064_040 0.1258532068 - - hypothetical protein POPTR_0008s02680g [Populus trichocarpa]
20 Hb_161393_010 0.1270030215 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_004200_040 Hb_004200_040 Hb_000140_260 Hb_000140_260 Hb_004200_040--Hb_000140_260 Hb_000205_210 Hb_000205_210 Hb_004200_040--Hb_000205_210 Hb_003900_050 Hb_003900_050 Hb_004200_040--Hb_003900_050 Hb_004463_040 Hb_004463_040 Hb_004200_040--Hb_004463_040 Hb_027141_010 Hb_027141_010 Hb_004200_040--Hb_027141_010 Hb_000684_020 Hb_000684_020 Hb_004200_040--Hb_000684_020 Hb_000140_260--Hb_000205_210 Hb_000140_260--Hb_027141_010 Hb_076895_020 Hb_076895_020 Hb_000140_260--Hb_076895_020 Hb_000539_080 Hb_000539_080 Hb_000140_260--Hb_000539_080 Hb_000984_080 Hb_000984_080 Hb_000140_260--Hb_000984_080 Hb_000205_210--Hb_003900_050 Hb_000205_210--Hb_027141_010 Hb_001105_200 Hb_001105_200 Hb_000205_210--Hb_001105_200 Hb_000205_210--Hb_000984_080 Hb_003900_050--Hb_004463_040 Hb_003900_050--Hb_000140_260 Hb_004881_060 Hb_004881_060 Hb_003900_050--Hb_004881_060 Hb_003900_050--Hb_000684_020 Hb_000976_020 Hb_000976_020 Hb_004463_040--Hb_000976_020 Hb_009012_020 Hb_009012_020 Hb_004463_040--Hb_009012_020 Hb_020332_040 Hb_020332_040 Hb_004463_040--Hb_020332_040 Hb_002048_010 Hb_002048_010 Hb_004463_040--Hb_002048_010 Hb_027141_010--Hb_076895_020 Hb_027141_010--Hb_020332_040 Hb_027141_010--Hb_000539_080 Hb_110218_010 Hb_110218_010 Hb_000684_020--Hb_110218_010 Hb_000684_020--Hb_009012_020 Hb_000684_020--Hb_004463_040 Hb_002553_120 Hb_002553_120 Hb_000684_020--Hb_002553_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.20515 0.0841639 0.564832 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 5.24915 0.422482

CAGE analysis