Hb_004202_030

Information

Type -
Description -
Location Contig4202: 62396-64839
Sequence    

Annotation

kegg
ID nve:NEMVE_v1g138339
description hypothetical protein
nr
ID XP_008387253.1
description PREDICTED: uncharacterized protein LOC103449702 [Malus domestica]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004202_030 0.0 - - PREDICTED: uncharacterized protein LOC103449702 [Malus domestica]
2 Hb_003207_120 0.0711972979 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
3 Hb_000086_470 0.0719199355 - - hypothetical protein JCGZ_17645 [Jatropha curcas]
4 Hb_006501_080 0.0759213031 - - PREDICTED: uncharacterized protein LOC105637775 [Jatropha curcas]
5 Hb_029262_010 0.0875363374 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Populus euphratica]
6 Hb_019973_010 0.0991832348 - - PREDICTED: probable methyltransferase PMT18 isoform X2 [Jatropha curcas]
7 Hb_004308_030 0.1017851088 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
8 Hb_002518_040 0.101841633 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
9 Hb_007237_020 0.1029151734 - - PREDICTED: protein trichome birefringence-like 23 [Jatropha curcas]
10 Hb_002053_180 0.1034782565 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
11 Hb_007313_030 0.1083761382 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 [Jatropha curcas]
12 Hb_032731_010 0.1085999942 - - RING-H2 finger protein ATL5M precursor, putative [Ricinus communis]
13 Hb_000007_330 0.1093976848 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
14 Hb_004137_110 0.109866247 - - PREDICTED: probable auxin efflux carrier component 6 [Jatropha curcas]
15 Hb_000349_250 0.1099553246 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g12460 [Jatropha curcas]
16 Hb_121313_010 0.1103853767 - - PREDICTED: endoglucanase 24-like [Jatropha curcas]
17 Hb_003873_020 0.1105395957 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
18 Hb_001606_010 0.1120500772 - - kinase, putative [Ricinus communis]
19 Hb_001926_070 0.1135699935 - - hypothetical protein JCGZ_21510 [Jatropha curcas]
20 Hb_001680_020 0.1152995157 desease resistance Gene Name: RPW8 Disease resistance protein ADR1, putative [Ricinus communis]

Gene co-expression network

sample Hb_004202_030 Hb_004202_030 Hb_003207_120 Hb_003207_120 Hb_004202_030--Hb_003207_120 Hb_000086_470 Hb_000086_470 Hb_004202_030--Hb_000086_470 Hb_006501_080 Hb_006501_080 Hb_004202_030--Hb_006501_080 Hb_029262_010 Hb_029262_010 Hb_004202_030--Hb_029262_010 Hb_019973_010 Hb_019973_010 Hb_004202_030--Hb_019973_010 Hb_004308_030 Hb_004308_030 Hb_004202_030--Hb_004308_030 Hb_001519_090 Hb_001519_090 Hb_003207_120--Hb_001519_090 Hb_002518_040 Hb_002518_040 Hb_003207_120--Hb_002518_040 Hb_005977_080 Hb_005977_080 Hb_003207_120--Hb_005977_080 Hb_004137_110 Hb_004137_110 Hb_003207_120--Hb_004137_110 Hb_003207_120--Hb_000086_470 Hb_007237_020 Hb_007237_020 Hb_000086_470--Hb_007237_020 Hb_000120_340 Hb_000120_340 Hb_000086_470--Hb_000120_340 Hb_007313_030 Hb_007313_030 Hb_000086_470--Hb_007313_030 Hb_007632_160 Hb_007632_160 Hb_000086_470--Hb_007632_160 Hb_000627_040 Hb_000627_040 Hb_000086_470--Hb_000627_040 Hb_006620_030 Hb_006620_030 Hb_006501_080--Hb_006620_030 Hb_006501_080--Hb_004308_030 Hb_001680_020 Hb_001680_020 Hb_006501_080--Hb_001680_020 Hb_006501_080--Hb_029262_010 Hb_006501_080--Hb_003207_120 Hb_029262_010--Hb_004308_030 Hb_000160_190 Hb_000160_190 Hb_029262_010--Hb_000160_190 Hb_003502_040 Hb_003502_040 Hb_029262_010--Hb_003502_040 Hb_000049_030 Hb_000049_030 Hb_029262_010--Hb_000049_030 Hb_019973_010--Hb_000120_340 Hb_004115_010 Hb_004115_010 Hb_019973_010--Hb_004115_010 Hb_019973_010--Hb_000086_470 Hb_000349_250 Hb_000349_250 Hb_019973_010--Hb_000349_250 Hb_019973_010--Hb_003207_120 Hb_004308_030--Hb_006620_030 Hb_000809_220 Hb_000809_220 Hb_004308_030--Hb_000809_220 Hb_049846_010 Hb_049846_010 Hb_004308_030--Hb_049846_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.109979 0.614739 0.34155 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0237646 0.246616

CAGE analysis