Hb_004204_030

Information

Type -
Description -
Location Contig4204: 28592-31192
Sequence    

Annotation

kegg
ID tcc:TCM_014213
description UPF0139 membrane protein
nr
ID ABK93624.1
description unknown [Populus trichocarpa]
swissprot
ID Q9SD88
description Protein Asterix OS=Arabidopsis thaliana GN=At5g07960 PE=3 SV=1
trembl
ID A9PB71
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID GO:0009507
description protein asterix

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41516: 28560-31223
cDNA
(Sanger)
(ID:Location)		 015_D11.ab1: 28539-31135 , 015_I07.ab1: 28560-31165 , 025_B23.ab1: 28560-31216 , 035_O15.ab1: 28560-31123 , 050_N01.ab1: 28560-31123

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004204_030 0.0 - - unknown [Populus trichocarpa]
2 Hb_001804_040 0.0570302412 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001951_110 0.0660086856 - - PREDICTED: DNA-binding protein DDB_G0278111 [Jatropha curcas]
4 Hb_000866_300 0.069363464 - - hypothetical protein CICLE_v10023145mg [Citrus clementina]
5 Hb_006569_020 0.0804766303 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
6 Hb_000392_270 0.0811190852 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
7 Hb_001514_020 0.0815980859 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
8 Hb_001754_150 0.0843311844 - - PREDICTED: vesicle-associated membrane protein 724 [Jatropha curcas]
9 Hb_017895_050 0.084634416 - - PREDICTED: LOW QUALITY PROTEIN: UPF0160 protein MYG1, mitochondrial [Jatropha curcas]
10 Hb_010449_020 0.0865228672 - - PREDICTED: rRNA-processing protein UTP23 homolog [Jatropha curcas]
11 Hb_004607_140 0.0870349853 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 [Populus euphratica]
12 Hb_001019_090 0.0880543165 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
13 Hb_007992_030 0.0883650498 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105646951 [Jatropha curcas]
14 Hb_054301_010 0.0893226025 - - hypothetical protein EUTSA_v10006737mg [Eutrema salsugineum]
15 Hb_000316_110 0.0900576784 - - Dolichyl-phosphate beta-glucosyltransferase, putative [Ricinus communis]
16 Hb_027892_060 0.0902042731 - - PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 isoform X1 [Jatropha curcas]
17 Hb_003688_100 0.090307496 - - Uncharacterized protein TCM_002515 [Theobroma cacao]
18 Hb_000617_320 0.0904333891 - - 40S ribosomal protein S21B [Hevea brasiliensis]
19 Hb_134226_010 0.0906624317 - - 40S ribosomal protein S21e, putative [Ricinus communis]
20 Hb_157854_010 0.0933008394 - - PREDICTED: myb family transcription factor APL-like [Jatropha curcas]

Gene co-expression network

sample Hb_004204_030 Hb_004204_030 Hb_001804_040 Hb_001804_040 Hb_004204_030--Hb_001804_040 Hb_001951_110 Hb_001951_110 Hb_004204_030--Hb_001951_110 Hb_000866_300 Hb_000866_300 Hb_004204_030--Hb_000866_300 Hb_006569_020 Hb_006569_020 Hb_004204_030--Hb_006569_020 Hb_000392_270 Hb_000392_270 Hb_004204_030--Hb_000392_270 Hb_001514_020 Hb_001514_020 Hb_004204_030--Hb_001514_020 Hb_001804_040--Hb_001951_110 Hb_001804_040--Hb_000866_300 Hb_001754_150 Hb_001754_150 Hb_001804_040--Hb_001754_150 Hb_001019_090 Hb_001019_090 Hb_001804_040--Hb_001019_090 Hb_001366_230 Hb_001366_230 Hb_001804_040--Hb_001366_230 Hb_001951_110--Hb_000866_300 Hb_000417_110 Hb_000417_110 Hb_001951_110--Hb_000417_110 Hb_001951_110--Hb_000392_270 Hb_002529_100 Hb_002529_100 Hb_001951_110--Hb_002529_100 Hb_000977_080 Hb_000977_080 Hb_000866_300--Hb_000977_080 Hb_000866_300--Hb_000392_270 Hb_000260_050 Hb_000260_050 Hb_000866_300--Hb_000260_050 Hb_000316_110 Hb_000316_110 Hb_006569_020--Hb_000316_110 Hb_022250_040 Hb_022250_040 Hb_006569_020--Hb_022250_040 Hb_001776_110 Hb_001776_110 Hb_006569_020--Hb_001776_110 Hb_001437_040 Hb_001437_040 Hb_006569_020--Hb_001437_040 Hb_159558_030 Hb_159558_030 Hb_006569_020--Hb_159558_030 Hb_004662_030 Hb_004662_030 Hb_006569_020--Hb_004662_030 Hb_000392_270--Hb_000977_080 Hb_001369_650 Hb_001369_650 Hb_000392_270--Hb_001369_650 Hb_003540_040 Hb_003540_040 Hb_000392_270--Hb_003540_040 Hb_003551_020 Hb_003551_020 Hb_000392_270--Hb_003551_020 Hb_003878_190 Hb_003878_190 Hb_000392_270--Hb_003878_190 Hb_011360_140 Hb_011360_140 Hb_000392_270--Hb_011360_140 Hb_003688_100 Hb_003688_100 Hb_001514_020--Hb_003688_100 Hb_000847_070 Hb_000847_070 Hb_001514_020--Hb_000847_070 Hb_143766_090 Hb_143766_090 Hb_001514_020--Hb_143766_090 Hb_004502_030 Hb_004502_030 Hb_001514_020--Hb_004502_030 Hb_007992_030 Hb_007992_030 Hb_001514_020--Hb_007992_030 Hb_001623_370 Hb_001623_370 Hb_001514_020--Hb_001623_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
317.247 48.634 48.8229 35.3485 287.174 258.615
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
333.808 331.898 140.581 79.891 24.1785

CAGE analysis