Hb_004204_040

Information

Type -
Description -
Location Contig4204: 31904-32290
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41516: 28560-31223
cDNA
(Sanger)
(ID:Location)		 015_D11.ab1: 28539-31135 , 015_I07.ab1: 28560-31165 , 025_B23.ab1: 28560-31216 , 035_O15.ab1: 28560-31123 , 050_N01.ab1: 28560-31123

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004204_040 0.0 - - -
2 Hb_002659_110 0.09448588 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
3 Hb_001810_050 0.1015097475 - - conserved hypothetical protein [Ricinus communis]
4 Hb_071079_060 0.1268089103 - - PREDICTED: uncharacterized protein LOC105113464 [Populus euphratica]
5 Hb_010926_020 0.1463475076 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Camelina sativa]
6 Hb_052802_010 0.1464004911 - - kinase, putative [Ricinus communis]
7 Hb_057018_010 0.1540813308 - - hypothetical protein JCGZ_04004 [Jatropha curcas]
8 Hb_008196_010 0.156933567 - - unnamed protein product [Coffea canephora]
9 Hb_000224_020 0.1586867508 - - PREDICTED: uncharacterized protein LOC105640888 [Jatropha curcas]
10 Hb_002894_020 0.1642419181 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
11 Hb_000628_060 0.1649709462 - - PREDICTED: calmodulin-like protein 5 [Solanum lycopersicum]
12 Hb_072670_010 0.1662420237 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
13 Hb_000579_210 0.1687583796 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
14 Hb_005736_010 0.1701475761 - - PREDICTED: bidirectional sugar transporter SWEET1 isoform X2 [Jatropha curcas]
15 Hb_004474_020 0.1705097303 - - aldo-keto reductase, putative [Ricinus communis]
16 Hb_045786_010 0.1717014727 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
17 Hb_008406_050 0.1724628369 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 2 [Jatropha curcas]
18 Hb_004899_380 0.1762627881 - - conserved hypothetical protein [Ricinus communis]
19 Hb_033772_040 0.1765695715 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002277_020 0.1781192158 - - Uncharacterized protein TCM_002409 [Theobroma cacao]

Gene co-expression network

sample Hb_004204_040 Hb_004204_040 Hb_002659_110 Hb_002659_110 Hb_004204_040--Hb_002659_110 Hb_001810_050 Hb_001810_050 Hb_004204_040--Hb_001810_050 Hb_071079_060 Hb_071079_060 Hb_004204_040--Hb_071079_060 Hb_010926_020 Hb_010926_020 Hb_004204_040--Hb_010926_020 Hb_052802_010 Hb_052802_010 Hb_004204_040--Hb_052802_010 Hb_057018_010 Hb_057018_010 Hb_004204_040--Hb_057018_010 Hb_130739_010 Hb_130739_010 Hb_002659_110--Hb_130739_010 Hb_002659_110--Hb_071079_060 Hb_002965_180 Hb_002965_180 Hb_002659_110--Hb_002965_180 Hb_087314_010 Hb_087314_010 Hb_002659_110--Hb_087314_010 Hb_048987_020 Hb_048987_020 Hb_002659_110--Hb_048987_020 Hb_012640_010 Hb_012640_010 Hb_001810_050--Hb_012640_010 Hb_001810_050--Hb_052802_010 Hb_001810_050--Hb_071079_060 Hb_002894_020 Hb_002894_020 Hb_001810_050--Hb_002894_020 Hb_006052_080 Hb_006052_080 Hb_001810_050--Hb_006052_080 Hb_071079_060--Hb_130739_010 Hb_071079_060--Hb_012640_010 Hb_020805_160 Hb_020805_160 Hb_071079_060--Hb_020805_160 Hb_010926_020--Hb_057018_010 Hb_072670_010 Hb_072670_010 Hb_010926_020--Hb_072670_010 Hb_005736_010 Hb_005736_010 Hb_010926_020--Hb_005736_010 Hb_002511_050 Hb_002511_050 Hb_010926_020--Hb_002511_050 Hb_010926_020--Hb_002894_020 Hb_000224_020 Hb_000224_020 Hb_010926_020--Hb_000224_020 Hb_007545_200 Hb_007545_200 Hb_052802_010--Hb_007545_200 Hb_052802_010--Hb_012640_010 Hb_119600_020 Hb_119600_020 Hb_052802_010--Hb_119600_020 Hb_052802_010--Hb_071079_060 Hb_057018_010--Hb_072670_010 Hb_057018_010--Hb_005736_010 Hb_004652_040 Hb_004652_040 Hb_057018_010--Hb_004652_040 Hb_002014_120 Hb_002014_120 Hb_057018_010--Hb_002014_120 Hb_003337_010 Hb_003337_010 Hb_057018_010--Hb_003337_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.498459 1.58567 1.31777 9.03496 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.375316 0

CAGE analysis