Hb_004204_120

Information

Type -
Description -
Location Contig4204: 72512-78949
Sequence    

Annotation

kegg
ID tcc:TCM_014164
description Leucine-rich repeat family protein isoform 1
nr
ID XP_012080354.1
description PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
swissprot
ID B9F655
description Plant intracellular Ras-group-related LRR protein 7 OS=Oryza sativa subsp. japonica GN=IRL7 PE=2 SV=1
trembl
ID A0A067KHK8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11695 PE=4 SV=1
Gene Ontology
ID GO:0005886
description plant intracellular ras-group-related lrr protein 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41528: 72734-78903 , PASA_asmbl_41529: 72751-73107
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004204_120 0.0 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
2 Hb_002685_190 0.0601555262 transcription factor TF Family: SET PREDICTED: probable zinc metalloprotease EGY1, chloroplastic [Jatropha curcas]
3 Hb_002030_040 0.067542981 - - hypothetical protein JCGZ_18677 [Jatropha curcas]
4 Hb_001235_190 0.0679191207 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
5 Hb_070986_010 0.0682137527 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
6 Hb_000120_750 0.0722164493 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
7 Hb_000798_030 0.0745327836 - - PREDICTED: uncharacterized protein LOC105635919 [Jatropha curcas]
8 Hb_000840_030 0.0746675761 transcription factor TF Family: IWS1 PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isoform X2 [Jatropha curcas]
9 Hb_002105_090 0.0753712129 - - Rab4 [Hevea brasiliensis]
10 Hb_000331_080 0.0756006812 - - PREDICTED: UPF0235 protein At5g63440 isoform X1 [Gossypium raimondii]
11 Hb_181288_010 0.0758842185 - - rac-GTP binding protein, putative [Ricinus communis]
12 Hb_004108_230 0.0766378986 - - PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein-like [Jatropha curcas]
13 Hb_001722_100 0.07770684 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000465_060 0.0783304432 - - PREDICTED: 60S ribosomal protein L15-1 isoform X2 [Jatropha curcas]
15 Hb_001257_080 0.078778287 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002963_010 0.0825716065 - - PREDICTED: autophagy-related protein 18b-like isoform X1 [Jatropha curcas]
17 Hb_002518_050 0.0828720741 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
18 Hb_003018_120 0.0837941837 - - PREDICTED: probable small nuclear ribonucleoprotein F [Jatropha curcas]
19 Hb_032717_080 0.0842223989 - - gamma-soluble nsf attachment protein, putative [Ricinus communis]
20 Hb_004837_140 0.0847397067 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]

Gene co-expression network

sample Hb_004204_120 Hb_004204_120 Hb_002685_190 Hb_002685_190 Hb_004204_120--Hb_002685_190 Hb_002030_040 Hb_002030_040 Hb_004204_120--Hb_002030_040 Hb_001235_190 Hb_001235_190 Hb_004204_120--Hb_001235_190 Hb_070986_010 Hb_070986_010 Hb_004204_120--Hb_070986_010 Hb_000120_750 Hb_000120_750 Hb_004204_120--Hb_000120_750 Hb_000798_030 Hb_000798_030 Hb_004204_120--Hb_000798_030 Hb_003599_040 Hb_003599_040 Hb_002685_190--Hb_003599_040 Hb_002963_010 Hb_002963_010 Hb_002685_190--Hb_002963_010 Hb_000465_060 Hb_000465_060 Hb_002685_190--Hb_000465_060 Hb_009954_040 Hb_009954_040 Hb_002685_190--Hb_009954_040 Hb_001278_110 Hb_001278_110 Hb_002685_190--Hb_001278_110 Hb_009773_020 Hb_009773_020 Hb_002030_040--Hb_009773_020 Hb_000840_030 Hb_000840_030 Hb_002030_040--Hb_000840_030 Hb_065525_020 Hb_065525_020 Hb_002030_040--Hb_065525_020 Hb_002105_090 Hb_002105_090 Hb_002030_040--Hb_002105_090 Hb_004324_310 Hb_004324_310 Hb_002030_040--Hb_004324_310 Hb_008173_090 Hb_008173_090 Hb_001235_190--Hb_008173_090 Hb_001722_100 Hb_001722_100 Hb_001235_190--Hb_001722_100 Hb_001235_190--Hb_002963_010 Hb_000307_090 Hb_000307_090 Hb_001235_190--Hb_000307_090 Hb_002110_120 Hb_002110_120 Hb_001235_190--Hb_002110_120 Hb_001584_070 Hb_001584_070 Hb_070986_010--Hb_001584_070 Hb_070986_010--Hb_002105_090 Hb_070986_010--Hb_000798_030 Hb_010883_150 Hb_010883_150 Hb_070986_010--Hb_010883_150 Hb_001257_080 Hb_001257_080 Hb_070986_010--Hb_001257_080 Hb_004108_230 Hb_004108_230 Hb_000120_750--Hb_004108_230 Hb_004837_140 Hb_004837_140 Hb_000120_750--Hb_004837_140 Hb_007479_020 Hb_007479_020 Hb_000120_750--Hb_007479_020 Hb_001383_060 Hb_001383_060 Hb_000120_750--Hb_001383_060 Hb_000317_340 Hb_000317_340 Hb_000120_750--Hb_000317_340 Hb_000417_110 Hb_000417_110 Hb_000798_030--Hb_000417_110 Hb_000634_050 Hb_000634_050 Hb_000798_030--Hb_000634_050 Hb_000045_190 Hb_000045_190 Hb_000798_030--Hb_000045_190 Hb_007741_050 Hb_007741_050 Hb_000798_030--Hb_007741_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.738 3.59363 5.27081 4.73054 9.20809 10.4605
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.5117 18.4605 8.95878 5.27774 3.54259

CAGE analysis