Hb_004204_170

Information

Type -
Description -
Location Contig4204: 120722-124516
Sequence    

Annotation

kegg
ID rcu:RCOM_1470520
description synaptosomal associated protein, putative
nr
ID XP_002514694.1
description synaptosomal associated protein, putative [Ricinus communis]
swissprot
ID Q9S7P9
description SNAP25 homologous protein SNAP33 OS=Arabidopsis thaliana GN=SNAP33 PE=1 SV=1
trembl
ID B9RLS5
description Synaptosomal associated protein, putative OS=Ricinus communis GN=RCOM_1470520 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41540: 120668-124577 , PASA_asmbl_41541: 120872-121470
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004204_170 0.0 - - synaptosomal associated protein, putative [Ricinus communis]
2 Hb_000856_190 0.0579943541 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
3 Hb_000983_090 0.0776080751 - - PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
4 Hb_000085_100 0.084389951 - - PREDICTED: protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5 [Jatropha curcas]
5 Hb_001617_050 0.0851093229 - - PREDICTED: uncharacterized protein LOC105649351 isoform X1 [Jatropha curcas]
6 Hb_001178_140 0.0878968234 - - PREDICTED: uncharacterized protein LOC105629472 isoform X1 [Jatropha curcas]
7 Hb_001277_270 0.0904134594 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
8 Hb_007813_040 0.090422472 - - PREDICTED: mediator of RNA polymerase II transcription subunit 34 isoform X2 [Jatropha curcas]
9 Hb_001892_020 0.092212526 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
10 Hb_003862_050 0.0930917628 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105641042 [Jatropha curcas]
11 Hb_029799_010 0.101719155 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
12 Hb_000723_200 0.1025353611 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
13 Hb_002950_100 0.1045369243 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
14 Hb_003050_390 0.1072269416 - - PREDICTED: uncharacterized protein LOC104442543 [Eucalyptus grandis]
15 Hb_005348_140 0.1074149979 - - PREDICTED: ubiquinone biosynthesis protein COQ9-B, mitochondrial [Jatropha curcas]
16 Hb_000818_010 0.1076934434 - - Calmodulin-domain protein kinase 5 isoform 1 [Theobroma cacao]
17 Hb_008511_090 0.1086148694 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
18 Hb_000646_050 0.1093299669 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Jatropha curcas]
19 Hb_000859_060 0.1102260181 - - PREDICTED: uncharacterized protein LOC105641312 [Jatropha curcas]
20 Hb_000398_010 0.1107025225 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004204_170 Hb_004204_170 Hb_000856_190 Hb_000856_190 Hb_004204_170--Hb_000856_190 Hb_000983_090 Hb_000983_090 Hb_004204_170--Hb_000983_090 Hb_000085_100 Hb_000085_100 Hb_004204_170--Hb_000085_100 Hb_001617_050 Hb_001617_050 Hb_004204_170--Hb_001617_050 Hb_001178_140 Hb_001178_140 Hb_004204_170--Hb_001178_140 Hb_001277_270 Hb_001277_270 Hb_004204_170--Hb_001277_270 Hb_000856_190--Hb_000983_090 Hb_000818_010 Hb_000818_010 Hb_000856_190--Hb_000818_010 Hb_000334_220 Hb_000334_220 Hb_000856_190--Hb_000334_220 Hb_000856_190--Hb_000085_100 Hb_012762_030 Hb_012762_030 Hb_000856_190--Hb_012762_030 Hb_002411_030 Hb_002411_030 Hb_000983_090--Hb_002411_030 Hb_000983_090--Hb_012762_030 Hb_012055_060 Hb_012055_060 Hb_000983_090--Hb_012055_060 Hb_000331_670 Hb_000331_670 Hb_000983_090--Hb_000331_670 Hb_000859_060 Hb_000859_060 Hb_000085_100--Hb_000859_060 Hb_000085_100--Hb_001178_140 Hb_000000_370 Hb_000000_370 Hb_000085_100--Hb_000000_370 Hb_126643_020 Hb_126643_020 Hb_000085_100--Hb_126643_020 Hb_000629_010 Hb_000629_010 Hb_000085_100--Hb_000629_010 Hb_005348_140 Hb_005348_140 Hb_001617_050--Hb_005348_140 Hb_010128_080 Hb_010128_080 Hb_001617_050--Hb_010128_080 Hb_000646_050 Hb_000646_050 Hb_001617_050--Hb_000646_050 Hb_050622_050 Hb_050622_050 Hb_001617_050--Hb_050622_050 Hb_000538_270 Hb_000538_270 Hb_001617_050--Hb_000538_270 Hb_001226_040 Hb_001226_040 Hb_001617_050--Hb_001226_040 Hb_001178_140--Hb_000859_060 Hb_001178_140--Hb_000629_010 Hb_007813_040 Hb_007813_040 Hb_001178_140--Hb_007813_040 Hb_001892_020 Hb_001892_020 Hb_001178_140--Hb_001892_020 Hb_001277_270--Hb_000859_060 Hb_001277_270--Hb_126643_020 Hb_001277_270--Hb_001178_140 Hb_001277_270--Hb_000085_100 Hb_002085_110 Hb_002085_110 Hb_001277_270--Hb_002085_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.3118 50.7014 37.5253 32.0316 34.7054 38.2667
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.7763 35.0298 80.7996 31.2568 12.0922

CAGE analysis