Hb_004204_200

Information

Type -
Description -
Location Contig4204: 130844-131137
Sequence    

Annotation

kegg
ID rcu:RCOM_1470530
description Protein C6orf149, putative
nr
ID XP_012080343.1
description PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
swissprot
ID B5FZA8
description LYR motif-containing protein 4 OS=Taeniopygia guttata GN=LYRM4 PE=3 SV=1
trembl
ID A0A067K5C2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11688 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004204_200 0.0 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
2 Hb_000749_150 0.0652922044 - - -
3 Hb_001741_140 0.0780224609 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
4 Hb_010128_130 0.078889763 - - PREDICTED: G patch domain-containing protein 8 isoform X1 [Jatropha curcas]
5 Hb_001221_230 0.0808959394 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000905_190 0.0825926613 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
7 Hb_000349_060 0.0836358932 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
8 Hb_009411_020 0.0837269233 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
9 Hb_004198_010 0.0838036661 - - Eukaryotic translation initiation factor 2 subunit beta [Theobroma cacao]
10 Hb_000120_500 0.0850334698 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
11 Hb_003120_060 0.0854100965 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
12 Hb_001214_130 0.0857255292 - - PREDICTED: uncharacterized protein LOC105646578 [Jatropha curcas]
13 Hb_000156_140 0.0870579806 - - Ribosomal protein L18ae/LX family protein [Theobroma cacao]
14 Hb_000186_280 0.087772581 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
15 Hb_002997_170 0.0881648962 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
16 Hb_043302_010 0.0885664409 - - ADP,ATP carrier protein, putative [Ricinus communis]
17 Hb_004944_010 0.0886373478 - - small nuclear ribonucleoprotein E [Hevea brasiliensis]
18 Hb_004044_020 0.0892392712 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
19 Hb_000165_030 0.0898341634 - - PREDICTED: uncharacterized protein LOC105645673 isoform X1 [Jatropha curcas]
20 Hb_000209_090 0.090939957 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_004204_200 Hb_004204_200 Hb_000749_150 Hb_000749_150 Hb_004204_200--Hb_000749_150 Hb_001741_140 Hb_001741_140 Hb_004204_200--Hb_001741_140 Hb_010128_130 Hb_010128_130 Hb_004204_200--Hb_010128_130 Hb_001221_230 Hb_001221_230 Hb_004204_200--Hb_001221_230 Hb_000905_190 Hb_000905_190 Hb_004204_200--Hb_000905_190 Hb_000349_060 Hb_000349_060 Hb_004204_200--Hb_000349_060 Hb_010608_010 Hb_010608_010 Hb_000749_150--Hb_010608_010 Hb_000803_150 Hb_000803_150 Hb_000749_150--Hb_000803_150 Hb_000165_030 Hb_000165_030 Hb_000749_150--Hb_000165_030 Hb_000204_040 Hb_000204_040 Hb_000749_150--Hb_000204_040 Hb_000120_500 Hb_000120_500 Hb_000749_150--Hb_000120_500 Hb_001741_140--Hb_010128_130 Hb_002997_170 Hb_002997_170 Hb_001741_140--Hb_002997_170 Hb_143629_010 Hb_143629_010 Hb_001741_140--Hb_143629_010 Hb_000997_020 Hb_000997_020 Hb_001741_140--Hb_000997_020 Hb_001741_140--Hb_000905_190 Hb_000107_050 Hb_000107_050 Hb_001741_140--Hb_000107_050 Hb_010128_130--Hb_000107_050 Hb_000933_180 Hb_000933_180 Hb_010128_130--Hb_000933_180 Hb_010128_130--Hb_001221_230 Hb_009767_120 Hb_009767_120 Hb_010128_130--Hb_009767_120 Hb_012675_090 Hb_012675_090 Hb_010128_130--Hb_012675_090 Hb_000035_380 Hb_000035_380 Hb_001221_230--Hb_000035_380 Hb_000317_430 Hb_000317_430 Hb_001221_230--Hb_000317_430 Hb_000032_570 Hb_000032_570 Hb_001221_230--Hb_000032_570 Hb_001214_130 Hb_001214_130 Hb_001221_230--Hb_001214_130 Hb_001221_230--Hb_001741_140 Hb_003642_060 Hb_003642_060 Hb_000905_190--Hb_003642_060 Hb_000905_190--Hb_002997_170 Hb_000905_190--Hb_001214_130 Hb_005928_060 Hb_005928_060 Hb_000905_190--Hb_005928_060 Hb_003453_020 Hb_003453_020 Hb_000905_190--Hb_003453_020 Hb_004944_010 Hb_004944_010 Hb_000349_060--Hb_004944_010 Hb_000780_060 Hb_000780_060 Hb_000349_060--Hb_000780_060 Hb_105386_010 Hb_105386_010 Hb_000349_060--Hb_105386_010 Hb_023001_050 Hb_023001_050 Hb_000349_060--Hb_023001_050 Hb_001358_030 Hb_001358_030 Hb_000349_060--Hb_001358_030 Hb_000465_430 Hb_000465_430 Hb_000349_060--Hb_000465_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
164.867 44.7219 39.7059 43.7285 135.931 220.761
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
89.0653 136.036 71.6537 42.0364 27.957

CAGE analysis