Hb_004204_210

Information

Type -
Description -
Location Contig4204: 132615-140713
Sequence    

Annotation

kegg
ID rcu:RCOM_1470540
description Heparanase-2, putative
nr
ID XP_012080342.1
description PREDICTED: heparanase-like protein 1 [Jatropha curcas]
swissprot
ID Q9FF10
description Heparanase-like protein 1 OS=Arabidopsis thaliana GN=At5g07830 PE=2 SV=1
trembl
ID A0A067K518
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11687 PE=4 SV=1
Gene Ontology
ID GO:0016020
description heparanase-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41544: 132620-140703 , PASA_asmbl_41545: 132620-140702 , PASA_asmbl_41546: 132620-140702 , PASA_asmbl_41547: 140520-140926 , PASA_asmbl_41548: 137327-137535
cDNA
(Sanger)
(ID:Location)		 016_B01.ab1: 138078-140695 , 035_A20.ab1: 138077-140695 , 053_L20.ab1: 138058-140695

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004204_210 0.0 - - PREDICTED: heparanase-like protein 1 [Jatropha curcas]
2 Hb_000984_140 0.0958228577 - - PREDICTED: xylulose kinase [Jatropha curcas]
3 Hb_005772_030 0.096608429 - - PREDICTED: protein trichome birefringence-like 35 [Jatropha curcas]
4 Hb_003470_070 0.1116924808 - - rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis]
5 Hb_004746_010 0.1144271387 - - aldo/keto reductase, putative [Ricinus communis]
6 Hb_001140_180 0.1188229144 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
7 Hb_005701_090 0.1193896752 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_012353_040 0.1244308674 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
9 Hb_001053_080 0.1250352568 - - OsCesA3 protein [Morus notabilis]
10 Hb_086639_100 0.1268639008 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105646787 [Jatropha curcas]
11 Hb_000224_220 0.1319495228 - - PREDICTED: protein disulfide isomerase-like 2-3 [Jatropha curcas]
12 Hb_003849_120 0.1325992735 - - PREDICTED: uncharacterized protein LOC100264440 [Vitis vinifera]
13 Hb_000302_190 0.137808263 - - PREDICTED: uncharacterized protein At3g49140-like [Jatropha curcas]
14 Hb_001040_070 0.1390162541 - - PREDICTED: uncharacterized protein LOC105649523 [Jatropha curcas]
15 Hb_024570_040 0.1399293636 - - PREDICTED: clathrin interactor EPSIN 1 [Jatropha curcas]
16 Hb_004294_020 0.1414301607 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
17 Hb_029552_020 0.1418723407 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001411_030 0.1435693254 - - hypothetical protein POPTR_0003s09620g [Populus trichocarpa]
19 Hb_000001_090 0.1446960804 - - PREDICTED: uncharacterized protein At3g58460 [Populus euphratica]
20 Hb_009078_020 0.1449013506 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]

Gene co-expression network

sample Hb_004204_210 Hb_004204_210 Hb_000984_140 Hb_000984_140 Hb_004204_210--Hb_000984_140 Hb_005772_030 Hb_005772_030 Hb_004204_210--Hb_005772_030 Hb_003470_070 Hb_003470_070 Hb_004204_210--Hb_003470_070 Hb_004746_010 Hb_004746_010 Hb_004204_210--Hb_004746_010 Hb_001140_180 Hb_001140_180 Hb_004204_210--Hb_001140_180 Hb_005701_090 Hb_005701_090 Hb_004204_210--Hb_005701_090 Hb_021977_010 Hb_021977_010 Hb_000984_140--Hb_021977_010 Hb_000984_140--Hb_005772_030 Hb_000984_140--Hb_001140_180 Hb_005854_040 Hb_005854_040 Hb_000984_140--Hb_005854_040 Hb_001414_010 Hb_001414_010 Hb_000984_140--Hb_001414_010 Hb_002809_160 Hb_002809_160 Hb_005772_030--Hb_002809_160 Hb_012353_040 Hb_012353_040 Hb_005772_030--Hb_012353_040 Hb_002025_270 Hb_002025_270 Hb_005772_030--Hb_002025_270 Hb_009078_020 Hb_009078_020 Hb_005772_030--Hb_009078_020 Hb_001427_210 Hb_001427_210 Hb_003470_070--Hb_001427_210 Hb_000562_070 Hb_000562_070 Hb_003470_070--Hb_000562_070 Hb_005181_040 Hb_005181_040 Hb_003470_070--Hb_005181_040 Hb_001040_070 Hb_001040_070 Hb_003470_070--Hb_001040_070 Hb_001411_030 Hb_001411_030 Hb_003470_070--Hb_001411_030 Hb_001277_340 Hb_001277_340 Hb_003470_070--Hb_001277_340 Hb_004746_010--Hb_000984_140 Hb_001434_020 Hb_001434_020 Hb_004746_010--Hb_001434_020 Hb_001677_100 Hb_001677_100 Hb_004746_010--Hb_001677_100 Hb_024758_020 Hb_024758_020 Hb_004746_010--Hb_024758_020 Hb_004746_010--Hb_005772_030 Hb_029552_020 Hb_029552_020 Hb_001140_180--Hb_029552_020 Hb_002828_060 Hb_002828_060 Hb_001140_180--Hb_002828_060 Hb_001279_020 Hb_001279_020 Hb_001140_180--Hb_001279_020 Hb_001140_180--Hb_000562_070 Hb_001053_080 Hb_001053_080 Hb_001140_180--Hb_001053_080 Hb_001411_130 Hb_001411_130 Hb_001140_180--Hb_001411_130 Hb_005701_090--Hb_001140_180 Hb_000224_220 Hb_000224_220 Hb_005701_090--Hb_000224_220 Hb_000302_190 Hb_000302_190 Hb_005701_090--Hb_000302_190 Hb_000300_560 Hb_000300_560 Hb_005701_090--Hb_000300_560 Hb_000878_160 Hb_000878_160 Hb_005701_090--Hb_000878_160 Hb_001789_020 Hb_001789_020 Hb_005701_090--Hb_001789_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.0317 26.3658 50.3077 38.9119 32.5724 10.0161
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.8618 4.18348 2.81844 33.6488 45.1217

CAGE analysis