Hb_004204_220

Information

Type -
Description -
Location Contig4204: 134429-135457
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 053_L20r.ab1: 132620-136831

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004204_220 0.0 - - -
2 Hb_001629_050 0.0554457748 - - structural constituent of cell wall, putative [Ricinus communis]
3 Hb_003858_060 0.0708649992 - - Germin-like protein subfamily 1 member 18 [Theobroma cacao]
4 Hb_011161_090 0.0922300051 - - -
5 Hb_002095_020 0.0947302451 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
6 Hb_000834_100 0.106444673 - - PREDICTED: uncharacterized protein LOC105178355 [Sesamum indicum]
7 Hb_002902_070 0.1067899721 - - PREDICTED: BTB/POZ domain-containing protein At5g67385 [Jatropha curcas]
8 Hb_005723_090 0.1093229922 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005329_030 0.1109002176 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
10 Hb_008461_070 0.1185151188 - - PREDICTED: ethylene-overproduction protein 1 isoform X1 [Jatropha curcas]
11 Hb_005057_030 0.1198928206 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
12 Hb_001305_020 0.1200328433 - - PREDICTED: uncharacterized protein LOC102623247 [Citrus sinensis]
13 Hb_004374_030 0.1207833463 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
14 Hb_094437_020 0.1217620398 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
15 Hb_000392_490 0.1224576798 - - PREDICTED: uncharacterized protein LOC105640495 isoform X1 [Jatropha curcas]
16 Hb_125961_010 0.1236176569 - - ATP binding protein, putative [Ricinus communis]
17 Hb_000868_130 0.1242215034 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
18 Hb_000245_100 0.1254939393 - - PREDICTED: uncharacterized protein LOC105631555 [Jatropha curcas]
19 Hb_000207_240 0.1293232606 - - hypothetical protein RCOM_0686540 [Ricinus communis]
20 Hb_003266_010 0.1310769685 - - hypothetical protein JCGZ_21945 [Jatropha curcas]

Gene co-expression network

sample Hb_004204_220 Hb_004204_220 Hb_001629_050 Hb_001629_050 Hb_004204_220--Hb_001629_050 Hb_003858_060 Hb_003858_060 Hb_004204_220--Hb_003858_060 Hb_011161_090 Hb_011161_090 Hb_004204_220--Hb_011161_090 Hb_002095_020 Hb_002095_020 Hb_004204_220--Hb_002095_020 Hb_000834_100 Hb_000834_100 Hb_004204_220--Hb_000834_100 Hb_002902_070 Hb_002902_070 Hb_004204_220--Hb_002902_070 Hb_167211_010 Hb_167211_010 Hb_001629_050--Hb_167211_010 Hb_000392_490 Hb_000392_490 Hb_001629_050--Hb_000392_490 Hb_001629_050--Hb_002095_020 Hb_001629_050--Hb_003858_060 Hb_001778_040 Hb_001778_040 Hb_001629_050--Hb_001778_040 Hb_003858_060--Hb_000834_100 Hb_002876_280 Hb_002876_280 Hb_003858_060--Hb_002876_280 Hb_000856_210 Hb_000856_210 Hb_003858_060--Hb_000856_210 Hb_094437_020 Hb_094437_020 Hb_003858_060--Hb_094437_020 Hb_003266_010 Hb_003266_010 Hb_011161_090--Hb_003266_010 Hb_011161_090--Hb_002095_020 Hb_011161_090--Hb_001629_050 Hb_011161_090--Hb_003858_060 Hb_005723_090 Hb_005723_090 Hb_011161_090--Hb_005723_090 Hb_001369_390 Hb_001369_390 Hb_002095_020--Hb_001369_390 Hb_002095_020--Hb_003266_010 Hb_000868_130 Hb_000868_130 Hb_002095_020--Hb_000868_130 Hb_004374_030 Hb_004374_030 Hb_002095_020--Hb_004374_030 Hb_000784_060 Hb_000784_060 Hb_002095_020--Hb_000784_060 Hb_000834_100--Hb_002902_070 Hb_001305_020 Hb_001305_020 Hb_000834_100--Hb_001305_020 Hb_000427_040 Hb_000427_040 Hb_000834_100--Hb_000427_040 Hb_000069_540 Hb_000069_540 Hb_000834_100--Hb_000069_540 Hb_002902_070--Hb_000069_540 Hb_002902_070--Hb_000868_130 Hb_002902_070--Hb_001305_020 Hb_002902_070--Hb_000427_040 Hb_144703_010 Hb_144703_010 Hb_002902_070--Hb_144703_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0819651 0.0490752 0.175487 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0717552 0.234605

CAGE analysis