Hb_004206_030

Information

Type -
Description -
Location Contig4206: 33424-35341
Sequence    

Annotation

kegg
ID pop:POPTR_0002s26430g
description hypothetical protein
nr
ID XP_012071807.1
description PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
swissprot
ID Q9LVQ7
description Protein indeterminate-domain 1 OS=Arabidopsis thaliana GN=IDD1 PE=1 SV=1
trembl
ID A0A067L2Z9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04404 PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein nutcracker-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41554: 33589-35260 , PASA_asmbl_41555: 33996-34173
cDNA
(Sanger)
(ID:Location)		 004_J15.ab1: 34450-35228

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004206_030 0.0 - - PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
2 Hb_060668_010 0.0830432572 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
3 Hb_012725_110 0.0871943757 - - hypothetical protein JCGZ_09397 [Jatropha curcas]
4 Hb_000041_070 0.0876719877 - - hypothetical protein POPTR_0001s34870g [Populus trichocarpa]
5 Hb_042729_010 0.0915811588 - - -
6 Hb_003106_140 0.0930145921 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002387_060 0.1061683862 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002000_110 0.111212564 - - ASR-like protein 2 [Hevea brasiliensis]
9 Hb_002685_090 0.1169462461 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
10 Hb_001741_080 0.117330365 rubber biosynthesis Gene Name: REF8 small rubber particle protein [Hevea brasiliensis]
11 Hb_001514_180 0.1181516244 transcription factor TF Family: M-type hypothetical protein JCGZ_16067 [Jatropha curcas]
12 Hb_006816_440 0.1196159843 - - protein phosphatase 2c, putative [Ricinus communis]
13 Hb_000270_410 0.1212966028 - - -
14 Hb_002936_050 0.1232891783 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR18 isoform X2 [Jatropha curcas]
15 Hb_001213_120 0.1241203079 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
16 Hb_015934_020 0.1272230116 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
17 Hb_149683_010 0.1286637604 rubber biosynthesis Gene Name: REF2 RecName: Full=Rubber elongation factor protein; Short=REF; AltName: Allergen=Hev b 1 [Hevea brasiliensis]
18 Hb_000085_300 0.1288545639 - - -
19 Hb_000032_220 0.1292385446 - - PREDICTED: abscisic acid receptor PYL8-like isoform X1 [Jatropha curcas]
20 Hb_002235_230 0.1322100853 - - latex abundant protein 1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_004206_030 Hb_004206_030 Hb_060668_010 Hb_060668_010 Hb_004206_030--Hb_060668_010 Hb_012725_110 Hb_012725_110 Hb_004206_030--Hb_012725_110 Hb_000041_070 Hb_000041_070 Hb_004206_030--Hb_000041_070 Hb_042729_010 Hb_042729_010 Hb_004206_030--Hb_042729_010 Hb_003106_140 Hb_003106_140 Hb_004206_030--Hb_003106_140 Hb_002387_060 Hb_002387_060 Hb_004206_030--Hb_002387_060 Hb_001741_080 Hb_001741_080 Hb_060668_010--Hb_001741_080 Hb_060668_010--Hb_000041_070 Hb_005016_130 Hb_005016_130 Hb_060668_010--Hb_005016_130 Hb_001514_180 Hb_001514_180 Hb_060668_010--Hb_001514_180 Hb_030765_020 Hb_030765_020 Hb_060668_010--Hb_030765_020 Hb_012725_110--Hb_002387_060 Hb_002685_090 Hb_002685_090 Hb_012725_110--Hb_002685_090 Hb_012725_110--Hb_000041_070 Hb_000836_500 Hb_000836_500 Hb_012725_110--Hb_000836_500 Hb_002291_030 Hb_002291_030 Hb_012725_110--Hb_002291_030 Hb_000041_070--Hb_001741_080 Hb_000041_070--Hb_001514_180 Hb_000041_070--Hb_002387_060 Hb_000041_070--Hb_002685_090 Hb_002936_050 Hb_002936_050 Hb_042729_010--Hb_002936_050 Hb_000934_030 Hb_000934_030 Hb_042729_010--Hb_000934_030 Hb_042729_010--Hb_012725_110 Hb_000419_040 Hb_000419_040 Hb_042729_010--Hb_000419_040 Hb_000003_840 Hb_000003_840 Hb_042729_010--Hb_000003_840 Hb_003106_140--Hb_060668_010 Hb_000032_220 Hb_000032_220 Hb_003106_140--Hb_000032_220 Hb_003106_140--Hb_002387_060 Hb_003106_140--Hb_001514_180 Hb_003106_140--Hb_000041_070 Hb_012522_030 Hb_012522_030 Hb_002387_060--Hb_012522_030 Hb_015934_020 Hb_015934_020 Hb_002387_060--Hb_015934_020 Hb_000085_300 Hb_000085_300 Hb_002387_060--Hb_000085_300 Hb_183963_020 Hb_183963_020 Hb_002387_060--Hb_183963_020 Hb_002387_060--Hb_000032_220 Hb_002387_060--Hb_002291_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
269.687 13.9466 2.97489 4.64853 100.454 191.718
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
545.493 373.528 443.259 72.4839 1.29441

CAGE analysis