Hb_004206_040

Information

Type -
Description -
Location Contig4206: 36651-44677
Sequence    

Annotation

kegg
ID rcu:RCOM_1593840
description cytochrome P450, putative (EC:1.3.3.9)
nr
ID XP_002510355.1
description cytochrome P450, putative [Ricinus communis]
swissprot
ID O48786
description Cytochrome P450 734A1 OS=Arabidopsis thaliana GN=CYP734A1 PE=2 SV=1
trembl
ID B9R7R2
description Cytochrome P450, putative OS=Ricinus communis GN=RCOM_1593840 PE=3 SV=1
Gene Ontology
ID GO:0016491
description cytochrome p450 734a1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41556: 37262-38554
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004206_040 0.0 - - cytochrome P450, putative [Ricinus communis]
2 Hb_000779_040 0.1057917213 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
3 Hb_000792_110 0.1074851607 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
4 Hb_000890_220 0.108987534 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
5 Hb_000016_180 0.1235513637 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
6 Hb_035360_010 0.1244578202 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
7 Hb_025048_040 0.1250255154 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
8 Hb_013753_010 0.1262152317 - - PREDICTED: uncharacterized protein LOC105647969 isoform X1 [Jatropha curcas]
9 Hb_000185_090 0.1266779319 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
10 Hb_000213_060 0.1295497205 - - PREDICTED: RRP12-like protein isoform X1 [Jatropha curcas]
11 Hb_000211_080 0.1302611645 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
12 Hb_000101_210 0.1327786888 - - PREDICTED: uncharacterized protein LOC105646445 [Jatropha curcas]
13 Hb_000211_090 0.1354249466 - - hypothetical protein PHAVU_011G023400g, partial [Phaseolus vulgaris]
14 Hb_000619_070 0.1371460194 - - PREDICTED: DNA mismatch repair protein MLH1 [Jatropha curcas]
15 Hb_000352_130 0.137820318 - - hypothetical protein CISIN_1g0419111mg, partial [Citrus sinensis]
16 Hb_000211_070 0.1389832695 - - isoleucyl tRNA synthetase, putative [Ricinus communis]
17 Hb_012760_200 0.1393628486 - - protein phsophatase-2a, putative [Ricinus communis]
18 Hb_000608_340 0.1398095081 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Populus euphratica]
19 Hb_113216_010 0.1398748191 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
20 Hb_006901_040 0.1402751021 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004206_040 Hb_004206_040 Hb_000779_040 Hb_000779_040 Hb_004206_040--Hb_000779_040 Hb_000792_110 Hb_000792_110 Hb_004206_040--Hb_000792_110 Hb_000890_220 Hb_000890_220 Hb_004206_040--Hb_000890_220 Hb_000016_180 Hb_000016_180 Hb_004206_040--Hb_000016_180 Hb_035360_010 Hb_035360_010 Hb_004206_040--Hb_035360_010 Hb_025048_040 Hb_025048_040 Hb_004206_040--Hb_025048_040 Hb_000779_040--Hb_000890_220 Hb_000211_090 Hb_000211_090 Hb_000779_040--Hb_000211_090 Hb_000608_340 Hb_000608_340 Hb_000779_040--Hb_000608_340 Hb_000779_040--Hb_000792_110 Hb_004531_090 Hb_004531_090 Hb_000779_040--Hb_004531_090 Hb_003673_020 Hb_003673_020 Hb_000779_040--Hb_003673_020 Hb_000792_110--Hb_000211_090 Hb_000792_110--Hb_000890_220 Hb_000792_110--Hb_035360_010 Hb_010189_010 Hb_010189_010 Hb_000792_110--Hb_010189_010 Hb_012760_200 Hb_012760_200 Hb_000792_110--Hb_012760_200 Hb_000890_220--Hb_000211_090 Hb_013753_010 Hb_013753_010 Hb_000890_220--Hb_013753_010 Hb_101151_020 Hb_101151_020 Hb_000890_220--Hb_101151_020 Hb_000890_220--Hb_012760_200 Hb_113216_010 Hb_113216_010 Hb_000016_180--Hb_113216_010 Hb_000185_090 Hb_000185_090 Hb_000016_180--Hb_000185_090 Hb_000016_180--Hb_000779_040 Hb_002918_070 Hb_002918_070 Hb_000016_180--Hb_002918_070 Hb_000016_180--Hb_000792_110 Hb_000213_060 Hb_000213_060 Hb_000016_180--Hb_000213_060 Hb_000619_070 Hb_000619_070 Hb_035360_010--Hb_000619_070 Hb_035360_010--Hb_003673_020 Hb_035360_010--Hb_000779_040 Hb_035360_010--Hb_000608_340 Hb_035360_010--Hb_000211_090 Hb_000212_280 Hb_000212_280 Hb_025048_040--Hb_000212_280 Hb_000331_480 Hb_000331_480 Hb_025048_040--Hb_000331_480 Hb_000270_450 Hb_000270_450 Hb_025048_040--Hb_000270_450 Hb_025048_040--Hb_012760_200 Hb_005028_010 Hb_005028_010 Hb_025048_040--Hb_005028_010 Hb_001009_050 Hb_001009_050 Hb_025048_040--Hb_001009_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.2015 5.42915 0.633959 0.401826 17.4911 18.3887
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.7691 2.49965 1.38181 3.17384 0.192371

CAGE analysis