Hb_004208_020

Information

Type -
Description -
Location Contig4208: 10802-11880
Sequence    

Annotation

kegg
ID rcu:RCOM_1355230
description phosphoglycerate kinase, putative (EC:2.7.2.3)
nr
ID XP_002519506.1
description phosphoglycerate kinase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S0I7
description Phosphoglycerate kinase OS=Ricinus communis GN=RCOM_1355230 PE=3 SV=1
Gene Ontology
ID GO:0016301
description phosphoglycerate cytosolic-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004208_020 0.0 - - phosphoglycerate kinase, putative [Ricinus communis]
2 Hb_004330_050 0.1523400058 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001300_060 0.1523552033 - - PREDICTED: monothiol glutaredoxin-S6-like [Jatropha curcas]
4 Hb_010308_010 0.1527838955 - - hypothetical protein JCGZ_22818 [Jatropha curcas]
5 Hb_000496_080 0.1530779895 - - Proteinase inhibitor, putative [Ricinus communis]
6 Hb_020112_010 0.158452109 - - acyltransferase, putative [Ricinus communis]
7 Hb_006275_040 0.1592703951 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
8 Hb_000329_570 0.165719851 - - -
9 Hb_001404_060 0.1665936594 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
10 Hb_006103_050 0.1687649017 - - -
11 Hb_073870_010 0.1691723608 - - hypothetical protein RCOM_0725510 [Ricinus communis]
12 Hb_005144_140 0.1787584675 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000743_070 0.1839123753 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21060 [Jatropha curcas]
14 Hb_000917_070 0.1886705157 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005551_070 0.1890494333 - - PREDICTED: uncharacterized protein LOC105635822 isoform X1 [Jatropha curcas]
16 Hb_004785_150 0.1923571585 - - hypothetical protein JCGZ_25207 [Jatropha curcas]
17 Hb_001863_520 0.193160306 - - conserved hypothetical protein [Ricinus communis]
18 Hb_023714_010 0.1965501122 - - hypothetical protein B456_007G377100 [Gossypium raimondii]
19 Hb_007138_010 0.1990159188 - - PREDICTED: putative laccase-9 [Jatropha curcas]
20 Hb_003057_040 0.1996924079 - - PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Vitis vinifera]

Gene co-expression network

sample Hb_004208_020 Hb_004208_020 Hb_004330_050 Hb_004330_050 Hb_004208_020--Hb_004330_050 Hb_001300_060 Hb_001300_060 Hb_004208_020--Hb_001300_060 Hb_010308_010 Hb_010308_010 Hb_004208_020--Hb_010308_010 Hb_000496_080 Hb_000496_080 Hb_004208_020--Hb_000496_080 Hb_020112_010 Hb_020112_010 Hb_004208_020--Hb_020112_010 Hb_006275_040 Hb_006275_040 Hb_004208_020--Hb_006275_040 Hb_004330_050--Hb_010308_010 Hb_004330_050--Hb_000496_080 Hb_004330_050--Hb_020112_010 Hb_004330_050--Hb_001300_060 Hb_000329_570 Hb_000329_570 Hb_004330_050--Hb_000329_570 Hb_000743_070 Hb_000743_070 Hb_004330_050--Hb_000743_070 Hb_001300_060--Hb_010308_010 Hb_001300_060--Hb_000496_080 Hb_001300_060--Hb_000329_570 Hb_001300_060--Hb_020112_010 Hb_001300_060--Hb_006275_040 Hb_010308_010--Hb_000496_080 Hb_010308_010--Hb_020112_010 Hb_010308_010--Hb_000329_570 Hb_010308_010--Hb_000743_070 Hb_000496_080--Hb_020112_010 Hb_000496_080--Hb_000329_570 Hb_000496_080--Hb_000743_070 Hb_020112_010--Hb_000329_570 Hb_020112_010--Hb_000743_070 Hb_005144_140 Hb_005144_140 Hb_006275_040--Hb_005144_140 Hb_003057_040 Hb_003057_040 Hb_006275_040--Hb_003057_040 Hb_000917_070 Hb_000917_070 Hb_006275_040--Hb_000917_070 Hb_006275_040--Hb_010308_010 Hb_023714_010 Hb_023714_010 Hb_006275_040--Hb_023714_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.21787 1.16597 0.0808208 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.411113 0

CAGE analysis