Hb_004208_030

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig4208: 13288-20010
Sequence    

Annotation

kegg
ID rcu:RCOM_1355220
description DNA binding protein, putative
nr
ID XP_012082413.1
description PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
swissprot
ID Q8LJT8
description TSL-kinase interacting protein 1 OS=Arabidopsis thaliana GN=TKI1 PE=1 SV=2
trembl
ID A0A067K275
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16542 PE=4 SV=1
Gene Ontology
ID GO:0005634
description tsl-kinase interacting protein 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41558: 12125-12584 , PASA_asmbl_41559: 13290-13579 , PASA_asmbl_41560: 13290-14603 , PASA_asmbl_41561: 13353-14605 , PASA_asmbl_41562: 14606-19908
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004208_030 0.0 transcription factor TF Family: MYB-related PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
2 Hb_013358_040 0.0648316808 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
3 Hb_001247_250 0.0672109124 - - PREDICTED: uncharacterized protein LOC105647377 [Jatropha curcas]
4 Hb_002754_010 0.0690906825 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
5 Hb_002073_200 0.0708192511 - - Phosphatase 2A-2 [Theobroma cacao]
6 Hb_000172_430 0.0712187006 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002110_150 0.0733879111 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
8 Hb_000331_670 0.0746343255 - - PREDICTED: protein tipD [Jatropha curcas]
9 Hb_000069_310 0.0772075436 - - ubiquitin ligase [Cucumis melo subsp. melo]
10 Hb_000025_730 0.0773954266 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
11 Hb_003849_110 0.0775761971 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
12 Hb_000331_550 0.0779949015 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
13 Hb_003657_010 0.0802655903 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003001_080 0.0807211329 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
15 Hb_000869_080 0.0812605748 - - PREDICTED: uncharacterized protein LOC105641084 isoform X2 [Jatropha curcas]
16 Hb_002818_030 0.08258139 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
17 Hb_022256_020 0.0827300107 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35130, chloroplastic [Jatropha curcas]
18 Hb_000868_110 0.0829470411 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
19 Hb_000230_500 0.0830969915 - - PREDICTED: pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Jatropha curcas]
20 Hb_000331_680 0.0831457729 - - Protein bem46, putative [Ricinus communis]

Gene co-expression network

sample Hb_004208_030 Hb_004208_030 Hb_013358_040 Hb_013358_040 Hb_004208_030--Hb_013358_040 Hb_001247_250 Hb_001247_250 Hb_004208_030--Hb_001247_250 Hb_002754_010 Hb_002754_010 Hb_004208_030--Hb_002754_010 Hb_002073_200 Hb_002073_200 Hb_004208_030--Hb_002073_200 Hb_000172_430 Hb_000172_430 Hb_004208_030--Hb_000172_430 Hb_002110_150 Hb_002110_150 Hb_004208_030--Hb_002110_150 Hb_000069_310 Hb_000069_310 Hb_013358_040--Hb_000069_310 Hb_000915_180 Hb_000915_180 Hb_013358_040--Hb_000915_180 Hb_164010_040 Hb_164010_040 Hb_013358_040--Hb_164010_040 Hb_013358_040--Hb_002073_200 Hb_003428_010 Hb_003428_010 Hb_013358_040--Hb_003428_010 Hb_000869_080 Hb_000869_080 Hb_013358_040--Hb_000869_080 Hb_033006_030 Hb_033006_030 Hb_001247_250--Hb_033006_030 Hb_001247_250--Hb_000172_430 Hb_000201_100 Hb_000201_100 Hb_001247_250--Hb_000201_100 Hb_002234_170 Hb_002234_170 Hb_001247_250--Hb_002234_170 Hb_001247_250--Hb_002073_200 Hb_002754_010--Hb_164010_040 Hb_000331_550 Hb_000331_550 Hb_002754_010--Hb_000331_550 Hb_000926_090 Hb_000926_090 Hb_002754_010--Hb_000926_090 Hb_065525_040 Hb_065525_040 Hb_002754_010--Hb_065525_040 Hb_002754_010--Hb_013358_040 Hb_001300_150 Hb_001300_150 Hb_002754_010--Hb_001300_150 Hb_000868_110 Hb_000868_110 Hb_002073_200--Hb_000868_110 Hb_000025_730 Hb_000025_730 Hb_002073_200--Hb_000025_730 Hb_000738_020 Hb_000738_020 Hb_002073_200--Hb_000738_020 Hb_002073_200--Hb_164010_040 Hb_095296_010 Hb_095296_010 Hb_002073_200--Hb_095296_010 Hb_009911_030 Hb_009911_030 Hb_000172_430--Hb_009911_030 Hb_162275_050 Hb_162275_050 Hb_000172_430--Hb_162275_050 Hb_012779_090 Hb_012779_090 Hb_000172_430--Hb_012779_090 Hb_012194_030 Hb_012194_030 Hb_000172_430--Hb_012194_030 Hb_001838_060 Hb_001838_060 Hb_000172_430--Hb_001838_060 Hb_002046_180 Hb_002046_180 Hb_002110_150--Hb_002046_180 Hb_008725_260 Hb_008725_260 Hb_002110_150--Hb_008725_260 Hb_005779_060 Hb_005779_060 Hb_002110_150--Hb_005779_060 Hb_005463_100 Hb_005463_100 Hb_002110_150--Hb_005463_100 Hb_000016_250 Hb_000016_250 Hb_002110_150--Hb_000016_250 Hb_009767_110 Hb_009767_110 Hb_002110_150--Hb_009767_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.72896 11.3764 9.29043 6.91931 6.63358 6.82253
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.92108 10.8269 12.9154 5.76818 7.93392

CAGE analysis