Hb_004208_130

Information

Type -
Description -
Location Contig4208: 108343-115686
Sequence    

Annotation

kegg
ID rcu:RCOM_1355280
description cysteine-type peptidase, putative
nr
ID KDP29143.1
description hypothetical protein JCGZ_16532 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K263
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16532 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41566: 109302-115562 , PASA_asmbl_41567: 112718-113066 , PASA_asmbl_41569: 111042-113309 , PASA_asmbl_41570: 112315-112453
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004208_130 0.0 - - hypothetical protein JCGZ_16532 [Jatropha curcas]
2 Hb_000297_020 0.1632289568 - - PREDICTED: protein phosphatase 2C 77 [Jatropha curcas]
3 Hb_000907_170 0.175188784 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
4 Hb_145084_010 0.1769545644 - - PREDICTED: uncharacterized protein LOC105646270 [Jatropha curcas]
5 Hb_004931_100 0.1782049964 - - Actin depolymerizing factor 6 isoform 1 [Theobroma cacao]
6 Hb_002138_010 0.1812447291 - - hypothetical protein POPTR_0001s30620g [Populus trichocarpa]
7 Hb_002609_060 0.1848111166 - - PREDICTED: sugar transport protein 8-like [Jatropha curcas]
8 Hb_105602_010 0.194442251 - - Ketose-bisphosphate aldolase class-II family protein isoform 5 [Theobroma cacao]
9 Hb_003913_080 0.1945252897 - - rpl27A [Hemiselmis andersenii]
10 Hb_001114_050 0.1953464902 - - hypothetical protein RCOM_0744580 [Ricinus communis]
11 Hb_002374_400 0.1968839378 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
12 Hb_002835_100 0.1970005858 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]
13 Hb_002151_050 0.2016923497 - - cytochrome P450, putative [Ricinus communis]
14 Hb_162275_020 0.2029367618 - - phosphate transporter [Manihot esculenta]
15 Hb_000836_490 0.2046815551 - - PREDICTED: E3 SUMO-protein ligase pli1-like [Jatropha curcas]
16 Hb_008725_040 0.2053450078 - - PREDICTED: uncharacterized protein At4g29660 [Nelumbo nucifera]
17 Hb_000302_290 0.2056823554 - - 40S ribosomal S10-3 -like protein [Gossypium arboreum]
18 Hb_002719_080 0.2094747758 - - hypothetical protein POPTR_0006s27920g [Populus trichocarpa]
19 Hb_000184_230 0.2095304972 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 9-like [Jatropha curcas]
20 Hb_003750_030 0.2117294279 - - calmodulin-binding heat-shock protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004208_130 Hb_004208_130 Hb_000297_020 Hb_000297_020 Hb_004208_130--Hb_000297_020 Hb_000907_170 Hb_000907_170 Hb_004208_130--Hb_000907_170 Hb_145084_010 Hb_145084_010 Hb_004208_130--Hb_145084_010 Hb_004931_100 Hb_004931_100 Hb_004208_130--Hb_004931_100 Hb_002138_010 Hb_002138_010 Hb_004208_130--Hb_002138_010 Hb_002609_060 Hb_002609_060 Hb_004208_130--Hb_002609_060 Hb_017170_030 Hb_017170_030 Hb_000297_020--Hb_017170_030 Hb_007153_040 Hb_007153_040 Hb_000297_020--Hb_007153_040 Hb_105602_010 Hb_105602_010 Hb_000297_020--Hb_105602_010 Hb_162275_020 Hb_162275_020 Hb_000297_020--Hb_162275_020 Hb_000614_170 Hb_000614_170 Hb_000297_020--Hb_000614_170 Hb_000907_170--Hb_002609_060 Hb_000907_170--Hb_145084_010 Hb_000742_110 Hb_000742_110 Hb_000907_170--Hb_000742_110 Hb_000907_170--Hb_002138_010 Hb_010560_040 Hb_010560_040 Hb_000907_170--Hb_010560_040 Hb_003097_210 Hb_003097_210 Hb_000907_170--Hb_003097_210 Hb_145084_010--Hb_002609_060 Hb_000363_200 Hb_000363_200 Hb_145084_010--Hb_000363_200 Hb_001863_090 Hb_001863_090 Hb_145084_010--Hb_001863_090 Hb_145084_010--Hb_003097_210 Hb_001016_090 Hb_001016_090 Hb_145084_010--Hb_001016_090 Hb_005656_100 Hb_005656_100 Hb_004931_100--Hb_005656_100 Hb_002374_400 Hb_002374_400 Hb_004931_100--Hb_002374_400 Hb_001005_080 Hb_001005_080 Hb_004931_100--Hb_001005_080 Hb_002217_230 Hb_002217_230 Hb_004931_100--Hb_002217_230 Hb_004128_110 Hb_004128_110 Hb_004931_100--Hb_004128_110 Hb_000707_020 Hb_000707_020 Hb_004931_100--Hb_000707_020 Hb_002138_010--Hb_002374_400 Hb_000003_270 Hb_000003_270 Hb_002138_010--Hb_000003_270 Hb_001832_120 Hb_001832_120 Hb_002138_010--Hb_001832_120 Hb_002138_010--Hb_000742_110 Hb_007181_070 Hb_007181_070 Hb_002138_010--Hb_007181_070 Hb_003209_200 Hb_003209_200 Hb_002138_010--Hb_003209_200 Hb_002609_060--Hb_000742_110 Hb_002609_060--Hb_010560_040 Hb_002609_060--Hb_000363_200 Hb_002719_080 Hb_002719_080 Hb_002609_060--Hb_002719_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.6457 3.07398 1.14916 3.89952 1.86062 3.10302
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.8757 31.5807 19.6604 29.8352 2.65357

CAGE analysis