Hb_004208_140

Information

Type -
Description -
Location Contig4208: 118653-122802
Sequence    

Annotation

kegg
ID rcu:RCOM_1355390
description Protein kinase APK1A, chloroplast precursor, putative (EC:2.7.12.2)
nr
ID XP_012082392.1
description PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
swissprot
ID Q9LFP7
description Probable receptor-like protein kinase At5g15080 OS=Arabidopsis thaliana GN=At5g15080 PE=2 SV=1
trembl
ID A0A067KA27
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16529 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable receptor-like protein kinase at5g47070

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41571: 118651-122701
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004208_140 0.0 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
2 Hb_002900_120 0.1087955655 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
3 Hb_004774_020 0.1140538503 - - PREDICTED: PRA1 family protein B4-like [Camelina sativa]
4 Hb_002387_040 0.1222858627 - - protein transporter, putative [Ricinus communis]
5 Hb_002042_170 0.1241558105 - - RING/U-box superfamily protein [Theobroma cacao]
6 Hb_000156_090 0.1274257149 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 isoform X1 [Jatropha curcas]
7 Hb_002766_050 0.1289085877 - - PREDICTED: probable carboxylesterase 16 [Jatropha curcas]
8 Hb_006846_020 0.1298466792 - - PREDICTED: uncharacterized protein LOC105648685 [Jatropha curcas]
9 Hb_000699_210 0.1311616949 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
10 Hb_121089_020 0.1321182985 - - PREDICTED: UDP-glucose 4-epimerase GEPI48 [Jatropha curcas]
11 Hb_110567_010 0.1359765934 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic-like [Jatropha curcas]
12 Hb_024714_070 0.1378629999 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
13 Hb_000038_040 0.1382948519 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
14 Hb_000638_280 0.13937273 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
15 Hb_003417_030 0.1413576741 - - PREDICTED: sister chromatid cohesion 1 protein 2 isoform X1 [Jatropha curcas]
16 Hb_001898_130 0.1415050806 - - ATP binding protein, putative [Ricinus communis]
17 Hb_000045_260 0.1436471618 - - protein with unknown function [Ricinus communis]
18 Hb_001439_230 0.1458518452 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
19 Hb_002249_050 0.1470336025 - - Auxin response factor, putative [Ricinus communis]
20 Hb_003725_010 0.147970808 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]

Gene co-expression network

sample Hb_004208_140 Hb_004208_140 Hb_002900_120 Hb_002900_120 Hb_004208_140--Hb_002900_120 Hb_004774_020 Hb_004774_020 Hb_004208_140--Hb_004774_020 Hb_002387_040 Hb_002387_040 Hb_004208_140--Hb_002387_040 Hb_002042_170 Hb_002042_170 Hb_004208_140--Hb_002042_170 Hb_000156_090 Hb_000156_090 Hb_004208_140--Hb_000156_090 Hb_002766_050 Hb_002766_050 Hb_004208_140--Hb_002766_050 Hb_002965_050 Hb_002965_050 Hb_002900_120--Hb_002965_050 Hb_002876_210 Hb_002876_210 Hb_002900_120--Hb_002876_210 Hb_002900_120--Hb_000156_090 Hb_000711_010 Hb_000711_010 Hb_002900_120--Hb_000711_010 Hb_003581_280 Hb_003581_280 Hb_002900_120--Hb_003581_280 Hb_002900_120--Hb_004774_020 Hb_003925_040 Hb_003925_040 Hb_004774_020--Hb_003925_040 Hb_004774_020--Hb_002042_170 Hb_001439_230 Hb_001439_230 Hb_004774_020--Hb_001439_230 Hb_124677_040 Hb_124677_040 Hb_004774_020--Hb_124677_040 Hb_000699_210 Hb_000699_210 Hb_004774_020--Hb_000699_210 Hb_002248_120 Hb_002248_120 Hb_002387_040--Hb_002248_120 Hb_002387_040--Hb_000699_210 Hb_024714_070 Hb_024714_070 Hb_002387_040--Hb_024714_070 Hb_000418_050 Hb_000418_050 Hb_002387_040--Hb_000418_050 Hb_005288_050 Hb_005288_050 Hb_002387_040--Hb_005288_050 Hb_002804_010 Hb_002804_010 Hb_002387_040--Hb_002804_010 Hb_002042_170--Hb_000156_090 Hb_002042_170--Hb_003925_040 Hb_010872_070 Hb_010872_070 Hb_002042_170--Hb_010872_070 Hb_000656_390 Hb_000656_390 Hb_002042_170--Hb_000656_390 Hb_171900_020 Hb_171900_020 Hb_002042_170--Hb_171900_020 Hb_000156_090--Hb_002965_050 Hb_003018_030 Hb_003018_030 Hb_000156_090--Hb_003018_030 Hb_003428_090 Hb_003428_090 Hb_000156_090--Hb_003428_090 Hb_008725_050 Hb_008725_050 Hb_000156_090--Hb_008725_050 Hb_000638_280 Hb_000638_280 Hb_000156_090--Hb_000638_280 Hb_010891_020 Hb_010891_020 Hb_002766_050--Hb_010891_020 Hb_001616_110 Hb_001616_110 Hb_002766_050--Hb_001616_110 Hb_001054_070 Hb_001054_070 Hb_002766_050--Hb_001054_070 Hb_027654_080 Hb_027654_080 Hb_002766_050--Hb_027654_080 Hb_000123_240 Hb_000123_240 Hb_002766_050--Hb_000123_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.66818 38.1896 21.871 13.7056 3.75779 2.46236
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.45757 10.9919 9.67324 12.694 10.8605

CAGE analysis