Hb_004209_030

Information

Type -
Description -
Location Contig4209: 44578-55602
Sequence    

Annotation

kegg
ID pop:POPTR_0018s10020g
description POPTRDRAFT_825892; hypothetical protein
nr
ID XP_012074052.1
description PREDICTED: (DL)-glycerol-3-phosphatase 2 isoform X1 [Jatropha curcas]
swissprot
ID Q8VZP1
description (DL)-glycerol-3-phosphatase 2 OS=Arabidopsis thaliana GN=GPP2 PE=1 SV=1
trembl
ID A0A067KJU5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08666 PE=4 SV=1
Gene Ontology
ID GO:0016787
description -glycerol-3-phosphatase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41587: 44693-55575 , PASA_asmbl_41588: 45038-46319
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004209_030 0.0 - - PREDICTED: (DL)-glycerol-3-phosphatase 2 isoform X1 [Jatropha curcas]
2 Hb_001434_070 0.0778022741 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
3 Hb_001377_380 0.0952295218 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
4 Hb_000260_200 0.107554299 - - -
5 Hb_004545_130 0.1111812791 - - uncharacterized protein LOC100305465 [Glycine max]
6 Hb_000635_080 0.1148658954 - - 60S ribosomal protein L17A [Hevea brasiliensis]
7 Hb_000780_210 0.1171424385 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
8 Hb_000163_210 0.1195096106 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]
9 Hb_003376_290 0.1314271158 - - hypothetical protein POPTR_0010s22880g [Populus trichocarpa]
10 Hb_002391_220 0.1330579833 - - PREDICTED: UPF0548 protein At2g17695 [Jatropha curcas]
11 Hb_000789_110 0.1340110225 - - RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101 [Hevea brasiliensis]
12 Hb_002316_120 0.1377942509 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
13 Hb_012539_020 0.1414226631 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
14 Hb_168711_010 0.1438706608 - - PREDICTED: (DL)-glycerol-3-phosphatase 2 [Sesamum indicum]
15 Hb_006588_080 0.1461507301 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
16 Hb_000069_140 0.1463827133 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
17 Hb_120823_010 0.146566492 - - -
18 Hb_000215_180 0.1466236896 - - hypothetical protein 17 [Hevea brasiliensis]
19 Hb_002248_100 0.1466425896 - - hypothetical protein VITISV_027197 [Vitis vinifera]
20 Hb_004567_020 0.1471027739 - - Small ubiquitin-related modifier 2 [Morus notabilis]

Gene co-expression network

sample Hb_004209_030 Hb_004209_030 Hb_001434_070 Hb_001434_070 Hb_004209_030--Hb_001434_070 Hb_001377_380 Hb_001377_380 Hb_004209_030--Hb_001377_380 Hb_000260_200 Hb_000260_200 Hb_004209_030--Hb_000260_200 Hb_004545_130 Hb_004545_130 Hb_004209_030--Hb_004545_130 Hb_000635_080 Hb_000635_080 Hb_004209_030--Hb_000635_080 Hb_000780_210 Hb_000780_210 Hb_004209_030--Hb_000780_210 Hb_001434_070--Hb_000260_200 Hb_001434_070--Hb_000635_080 Hb_003376_290 Hb_003376_290 Hb_001434_070--Hb_003376_290 Hb_001434_070--Hb_004545_130 Hb_000172_420 Hb_000172_420 Hb_001434_070--Hb_000172_420 Hb_001377_380--Hb_000780_210 Hb_001377_380--Hb_000635_080 Hb_002316_120 Hb_002316_120 Hb_001377_380--Hb_002316_120 Hb_001377_380--Hb_004545_130 Hb_000789_110 Hb_000789_110 Hb_001377_380--Hb_000789_110 Hb_000300_390 Hb_000300_390 Hb_001377_380--Hb_000300_390 Hb_000163_210 Hb_000163_210 Hb_000260_200--Hb_000163_210 Hb_002391_220 Hb_002391_220 Hb_000260_200--Hb_002391_220 Hb_000069_140 Hb_000069_140 Hb_000260_200--Hb_000069_140 Hb_001424_020 Hb_001424_020 Hb_000260_200--Hb_001424_020 Hb_001785_040 Hb_001785_040 Hb_000260_200--Hb_001785_040 Hb_012539_020 Hb_012539_020 Hb_000260_200--Hb_012539_020 Hb_004545_130--Hb_000635_080 Hb_000617_110 Hb_000617_110 Hb_004545_130--Hb_000617_110 Hb_000431_160 Hb_000431_160 Hb_004545_130--Hb_000431_160 Hb_004735_050 Hb_004735_050 Hb_004545_130--Hb_004735_050 Hb_000635_080--Hb_000780_210 Hb_002248_100 Hb_002248_100 Hb_000635_080--Hb_002248_100 Hb_006588_080 Hb_006588_080 Hb_000635_080--Hb_006588_080 Hb_000635_080--Hb_002316_120 Hb_183086_040 Hb_183086_040 Hb_000780_210--Hb_183086_040 Hb_000820_130 Hb_000820_130 Hb_000780_210--Hb_000820_130 Hb_000780_210--Hb_002316_120 Hb_000780_210--Hb_012539_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.18221 0.363369 1.99058 3.06291 1.89535 1.52519
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.014 24.8635 8.62829 4.98758 2.38081

CAGE analysis