Hb_004212_040

Information

Type -
Description -
Location Contig4212: 48003-52507
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015000mg
description hypothetical protein
nr
ID XP_007200265.1
description hypothetical protein PRUPE_ppa015000mg [Prunus persica]
swissprot
ID Q99315
description Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
trembl
ID M5VK25
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004212_040 0.0 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
2 Hb_032531_010 0.1662977045 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_050334_010 0.1669090739 - - -
4 Hb_000940_190 0.1720845699 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
5 Hb_099723_010 0.173336322 - - hypothetical protein JCGZ_15340 [Jatropha curcas]
6 Hb_065943_010 0.1793356348 - - -
7 Hb_006157_050 0.1838004211 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_002869_070 0.2007441251 - - -
9 Hb_001519_210 0.2008865263 - - hypothetical protein B456_003G032500 [Gossypium raimondii]
10 Hb_057451_040 0.2088144372 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_115656_010 0.2117310847 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
12 Hb_012295_020 0.2158930623 - - PREDICTED: uncharacterized protein LOC104223093 [Nicotiana sylvestris]
13 Hb_012071_010 0.221694523 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
14 Hb_142570_010 0.2264415126 - - PREDICTED: uncharacterized protein LOC104907573 [Beta vulgaris subsp. vulgaris]
15 Hb_002473_140 0.2278036215 - - -
16 Hb_106815_010 0.255841896 - - hypothetical protein, conserved [Eimeria acervulina]
17 Hb_043792_020 0.2672780019 - - Retrotransposon gag protein [Medicago truncatula]
18 Hb_002791_020 0.2682723605 - - hypothetical protein AALP_AA5G271700 [Arabis alpina]
19 Hb_001282_030 0.2684959665 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
20 Hb_000065_050 0.2706107004 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]

Gene co-expression network

sample Hb_004212_040 Hb_004212_040 Hb_032531_010 Hb_032531_010 Hb_004212_040--Hb_032531_010 Hb_050334_010 Hb_050334_010 Hb_004212_040--Hb_050334_010 Hb_000940_190 Hb_000940_190 Hb_004212_040--Hb_000940_190 Hb_099723_010 Hb_099723_010 Hb_004212_040--Hb_099723_010 Hb_065943_010 Hb_065943_010 Hb_004212_040--Hb_065943_010 Hb_006157_050 Hb_006157_050 Hb_004212_040--Hb_006157_050 Hb_032531_010--Hb_000940_190 Hb_032531_010--Hb_099723_010 Hb_032531_010--Hb_050334_010 Hb_032531_010--Hb_065943_010 Hb_032531_010--Hb_006157_050 Hb_012295_020 Hb_012295_020 Hb_032531_010--Hb_012295_020 Hb_001519_210 Hb_001519_210 Hb_050334_010--Hb_001519_210 Hb_050334_010--Hb_000940_190 Hb_050334_010--Hb_099723_010 Hb_002869_070 Hb_002869_070 Hb_050334_010--Hb_002869_070 Hb_050334_010--Hb_065943_010 Hb_000940_190--Hb_099723_010 Hb_000940_190--Hb_065943_010 Hb_000940_190--Hb_006157_050 Hb_000940_190--Hb_002869_070 Hb_099723_010--Hb_065943_010 Hb_099723_010--Hb_006157_050 Hb_099723_010--Hb_002869_070 Hb_065943_010--Hb_006157_050 Hb_065943_010--Hb_002869_070 Hb_006157_050--Hb_050334_010 Hb_006157_050--Hb_002869_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00764015 0 0 0 0.00423276
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0795873 0.0328111 0.106565

CAGE analysis