Hb_004216_050

Information

Type -
Description -
Location Contig4216: 58771-67603
Sequence    

Annotation

kegg
ID tcc:TCM_019960
description hypothetical protein
nr
ID XP_012065219.1
description PREDICTED: uncharacterized protein LOC105628422 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LI47
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20914 PE=4 SV=1
Gene Ontology
ID GO:0003677
description histone h2a deubiquitinase mysm1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41632: 58538-59065 , PASA_asmbl_41633: 59104-67390
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004216_050 0.0 - - PREDICTED: uncharacterized protein LOC105628422 [Jatropha curcas]
2 Hb_004567_120 0.0523082649 - - PREDICTED: 60S ribosomal protein L13a-4-like [Jatropha curcas]
3 Hb_005305_150 0.0602555514 - - PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]
4 Hb_006478_150 0.063296455 - - mitochondrial ribosomal protein L24, putative [Ricinus communis]
5 Hb_010068_020 0.0739573349 - - PREDICTED: uncharacterized protein LOC105632966 [Jatropha curcas]
6 Hb_000496_120 0.0755647446 - - PREDICTED: iron-sulfur protein NUBPL [Jatropha curcas]
7 Hb_004767_080 0.0764099983 - - PREDICTED: mitochondrial ATPase complex subunit ATP10 isoform X1 [Jatropha curcas]
8 Hb_033642_080 0.0802568824 - - V-type proton ATPase subunit E [Hevea brasiliensis]
9 Hb_002676_090 0.0840823724 - - PREDICTED: protein TIC 22-like, chloroplastic [Jatropha curcas]
10 Hb_007441_040 0.0856579862 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
11 Hb_005914_010 0.0861088223 - - PREDICTED: peroxisomal membrane protein PMP22 [Jatropha curcas]
12 Hb_001545_170 0.0870898043 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
13 Hb_001814_050 0.087396667 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_012490_070 0.0877016781 - - conserved hypothetical protein [Ricinus communis]
15 Hb_091433_020 0.0890564858 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
16 Hb_027073_040 0.0892875425 - - TGF-beta-inducible nuclear protein, putative [Ricinus communis]
17 Hb_086639_090 0.0914047951 - - 60S ribosomal protein L7a, putative [Ricinus communis]
18 Hb_002056_050 0.0915223898 - - PREDICTED: uncharacterized protein LOC105130744 [Populus euphratica]
19 Hb_000384_100 0.0920462889 - - hydrolase, putative [Ricinus communis]
20 Hb_003098_020 0.0927574565 - - 40S ribosomal protein S5B [Hevea brasiliensis]

Gene co-expression network

sample Hb_004216_050 Hb_004216_050 Hb_004567_120 Hb_004567_120 Hb_004216_050--Hb_004567_120 Hb_005305_150 Hb_005305_150 Hb_004216_050--Hb_005305_150 Hb_006478_150 Hb_006478_150 Hb_004216_050--Hb_006478_150 Hb_010068_020 Hb_010068_020 Hb_004216_050--Hb_010068_020 Hb_000496_120 Hb_000496_120 Hb_004216_050--Hb_000496_120 Hb_004767_080 Hb_004767_080 Hb_004216_050--Hb_004767_080 Hb_004567_120--Hb_006478_150 Hb_002676_090 Hb_002676_090 Hb_004567_120--Hb_002676_090 Hb_005568_120 Hb_005568_120 Hb_004567_120--Hb_005568_120 Hb_011644_030 Hb_011644_030 Hb_004567_120--Hb_011644_030 Hb_000136_170 Hb_000136_170 Hb_004567_120--Hb_000136_170 Hb_003098_020 Hb_003098_020 Hb_005305_150--Hb_003098_020 Hb_005305_150--Hb_004767_080 Hb_001545_170 Hb_001545_170 Hb_005305_150--Hb_001545_170 Hb_005305_150--Hb_000496_120 Hb_001814_050 Hb_001814_050 Hb_005305_150--Hb_001814_050 Hb_033642_080 Hb_033642_080 Hb_006478_150--Hb_033642_080 Hb_091433_020 Hb_091433_020 Hb_006478_150--Hb_091433_020 Hb_000417_360 Hb_000417_360 Hb_006478_150--Hb_000417_360 Hb_000441_110 Hb_000441_110 Hb_006478_150--Hb_000441_110 Hb_004375_100 Hb_004375_100 Hb_010068_020--Hb_004375_100 Hb_002056_050 Hb_002056_050 Hb_010068_020--Hb_002056_050 Hb_000384_100 Hb_000384_100 Hb_010068_020--Hb_000384_100 Hb_002043_130 Hb_002043_130 Hb_010068_020--Hb_002043_130 Hb_004157_030 Hb_004157_030 Hb_010068_020--Hb_004157_030 Hb_000215_060 Hb_000215_060 Hb_000496_120--Hb_000215_060 Hb_000496_120--Hb_091433_020 Hb_000496_120--Hb_033642_080 Hb_000496_120--Hb_001814_050 Hb_018124_010 Hb_018124_010 Hb_004767_080--Hb_018124_010 Hb_004767_080--Hb_091433_020 Hb_011671_100 Hb_011671_100 Hb_004767_080--Hb_011671_100 Hb_004767_080--Hb_000417_360 Hb_004767_080--Hb_002056_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.76625 3.52778 4.98557 6.01837 5.92869 8.58386
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.1264 21.7129 10.9617 12.0508 5.40322

CAGE analysis