Hb_004216_060

Information

Type -
Description -
Location Contig4216: 91068-94671
Sequence    

Annotation

kegg
ID rcu:RCOM_1205540
description hypothetical protein
nr
ID XP_002533839.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T6H0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1205540 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004216_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002477_290 0.1037956174 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
3 Hb_006059_030 0.1050136433 - - glutamate dehydrogenase, putative [Ricinus communis]
4 Hb_000364_050 0.1064570278 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
5 Hb_001269_130 0.109207816 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
6 Hb_000210_060 0.1124267132 transcription factor TF Family: E2F-DP hypothetical protein JCGZ_08780 [Jatropha curcas]
7 Hb_002173_070 0.115102816 - - MRG family protein isoform 2 [Theobroma cacao]
8 Hb_007821_030 0.1155996603 - - 5'-nucleotidase domain-containing [Gossypium arboreum]
9 Hb_005976_080 0.1162828338 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
10 Hb_012733_040 0.1169925393 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
11 Hb_002303_020 0.1178337167 - - PREDICTED: lysine--tRNA ligase-like [Gossypium raimondii]
12 Hb_002272_270 0.119148229 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
13 Hb_000841_050 0.1203250103 - - hypothetical protein L484_019972 [Morus notabilis]
14 Hb_002439_010 0.1205597799 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
15 Hb_000189_570 0.1209237316 - - PREDICTED: uncharacterized protein LOC105647652 [Jatropha curcas]
16 Hb_000107_270 0.1215641459 - - Histone deacetylase 1 isoform 1 [Theobroma cacao]
17 Hb_011224_050 0.1267589571 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Populus euphratica]
18 Hb_006452_100 0.1270529158 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
19 Hb_002392_010 0.1272038026 - - PREDICTED: apurinic endonuclease-redox protein isoform X4 [Jatropha curcas]
20 Hb_001578_020 0.1279672589 - - Protein virR, putative [Ricinus communis]

Gene co-expression network

sample Hb_004216_060 Hb_004216_060 Hb_002477_290 Hb_002477_290 Hb_004216_060--Hb_002477_290 Hb_006059_030 Hb_006059_030 Hb_004216_060--Hb_006059_030 Hb_000364_050 Hb_000364_050 Hb_004216_060--Hb_000364_050 Hb_001269_130 Hb_001269_130 Hb_004216_060--Hb_001269_130 Hb_000210_060 Hb_000210_060 Hb_004216_060--Hb_000210_060 Hb_002173_070 Hb_002173_070 Hb_004216_060--Hb_002173_070 Hb_004880_150 Hb_004880_150 Hb_002477_290--Hb_004880_150 Hb_000841_050 Hb_000841_050 Hb_002477_290--Hb_000841_050 Hb_002660_170 Hb_002660_170 Hb_002477_290--Hb_002660_170 Hb_007218_120 Hb_007218_120 Hb_002477_290--Hb_007218_120 Hb_000251_030 Hb_000251_030 Hb_002477_290--Hb_000251_030 Hb_006059_010 Hb_006059_010 Hb_002477_290--Hb_006059_010 Hb_012393_030 Hb_012393_030 Hb_006059_030--Hb_012393_030 Hb_006059_030--Hb_000364_050 Hb_012733_040 Hb_012733_040 Hb_006059_030--Hb_012733_040 Hb_005976_080 Hb_005976_080 Hb_006059_030--Hb_005976_080 Hb_000107_270 Hb_000107_270 Hb_006059_030--Hb_000107_270 Hb_001195_400 Hb_001195_400 Hb_006059_030--Hb_001195_400 Hb_007904_230 Hb_007904_230 Hb_000364_050--Hb_007904_230 Hb_004452_120 Hb_004452_120 Hb_000364_050--Hb_004452_120 Hb_000364_050--Hb_001269_130 Hb_000364_050--Hb_012733_040 Hb_010863_050 Hb_010863_050 Hb_000364_050--Hb_010863_050 Hb_000663_060 Hb_000663_060 Hb_001269_130--Hb_000663_060 Hb_000080_130 Hb_000080_130 Hb_001269_130--Hb_000080_130 Hb_003098_070 Hb_003098_070 Hb_001269_130--Hb_003098_070 Hb_006824_010 Hb_006824_010 Hb_001269_130--Hb_006824_010 Hb_005946_150 Hb_005946_150 Hb_001269_130--Hb_005946_150 Hb_015057_020 Hb_015057_020 Hb_000210_060--Hb_015057_020 Hb_168893_020 Hb_168893_020 Hb_000210_060--Hb_168893_020 Hb_000210_060--Hb_002477_290 Hb_001898_050 Hb_001898_050 Hb_000210_060--Hb_001898_050 Hb_001510_020 Hb_001510_020 Hb_000210_060--Hb_001510_020 Hb_005276_040 Hb_005276_040 Hb_000210_060--Hb_005276_040 Hb_021374_030 Hb_021374_030 Hb_002173_070--Hb_021374_030 Hb_007821_030 Hb_007821_030 Hb_002173_070--Hb_007821_030 Hb_002173_070--Hb_003098_070 Hb_002173_070--Hb_000364_050 Hb_000749_010 Hb_000749_010 Hb_002173_070--Hb_000749_010 Hb_002173_070--Hb_001269_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.272332 0.204101 0.520048 0.522802 0.0779531 0.327488
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.265763 0.604033 0.349821 0.64871 0.633087

CAGE analysis