Hb_004218_020

Information

Type -
Description -
Location Contig4218: 36440-39782
Sequence    

Annotation

kegg
ID rcu:RCOM_1453050
description hypothetical protein
nr
ID XP_002513084.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LM76
description U-box domain-containing protein 44 OS=Arabidopsis thaliana GN=PUB44 PE=1 SV=1
trembl
ID B9RGD2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1453050 PE=4 SV=1
Gene Ontology
ID GO:0016874
description u-box domain-containing protein 44-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41644: 36651-37064 , PASA_asmbl_41645: 37100-37237 , PASA_asmbl_41646: 37473-38881 , PASA_asmbl_41647: 39029-39547 , PASA_asmbl_41648: 39636-39945
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004218_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007810_010 0.0925911575 - - PREDICTED: uncharacterized protein LOC105647655 isoform X1 [Jatropha curcas]
3 Hb_006740_030 0.0964662009 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
4 Hb_003913_130 0.1048206483 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
5 Hb_000120_640 0.1056286449 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_032717_060 0.1087972809 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ18 isoform X1 [Jatropha curcas]
7 Hb_004218_010 0.1093985193 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
8 Hb_001124_130 0.1105681993 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
9 Hb_001287_040 0.1158049272 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
10 Hb_001357_200 0.1162926095 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
11 Hb_002542_110 0.1166985107 - - PREDICTED: uncharacterized protein LOC105642479 [Jatropha curcas]
12 Hb_000086_630 0.1175774955 - - PREDICTED: dicarboxylate transporter 2.1, chloroplastic [Jatropha curcas]
13 Hb_001486_250 0.1179408443 - - PREDICTED: uncharacterized protein LOC105632605 [Jatropha curcas]
14 Hb_000304_080 0.1180435438 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
15 Hb_000811_070 0.1191283203 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
16 Hb_004583_010 0.1206205117 - - PREDICTED: pentatricopeptide repeat-containing protein At3g22150, chloroplastic [Jatropha curcas]
17 Hb_004429_020 0.1211038976 - - PREDICTED: magnesium transporter MRS2-5 [Jatropha curcas]
18 Hb_001635_190 0.1218491031 - - RNA m5u methyltransferase, putative [Ricinus communis]
19 Hb_007533_040 0.1219779564 - - protein phosphatase 2c, putative [Ricinus communis]
20 Hb_001019_100 0.1227661859 - - BnaC02g13240D [Brassica napus]

Gene co-expression network

sample Hb_004218_020 Hb_004218_020 Hb_007810_010 Hb_007810_010 Hb_004218_020--Hb_007810_010 Hb_006740_030 Hb_006740_030 Hb_004218_020--Hb_006740_030 Hb_003913_130 Hb_003913_130 Hb_004218_020--Hb_003913_130 Hb_000120_640 Hb_000120_640 Hb_004218_020--Hb_000120_640 Hb_032717_060 Hb_032717_060 Hb_004218_020--Hb_032717_060 Hb_004218_010 Hb_004218_010 Hb_004218_020--Hb_004218_010 Hb_002043_030 Hb_002043_030 Hb_007810_010--Hb_002043_030 Hb_000008_440 Hb_000008_440 Hb_007810_010--Hb_000008_440 Hb_003657_010 Hb_003657_010 Hb_007810_010--Hb_003657_010 Hb_007810_010--Hb_000120_640 Hb_001541_070 Hb_001541_070 Hb_007810_010--Hb_001541_070 Hb_000140_090 Hb_000140_090 Hb_006740_030--Hb_000140_090 Hb_001541_120 Hb_001541_120 Hb_006740_030--Hb_001541_120 Hb_000928_070 Hb_000928_070 Hb_006740_030--Hb_000928_070 Hb_000811_070 Hb_000811_070 Hb_006740_030--Hb_000811_070 Hb_008421_020 Hb_008421_020 Hb_006740_030--Hb_008421_020 Hb_007533_040 Hb_007533_040 Hb_006740_030--Hb_007533_040 Hb_001357_200 Hb_001357_200 Hb_003913_130--Hb_001357_200 Hb_000025_350 Hb_000025_350 Hb_003913_130--Hb_000025_350 Hb_003913_130--Hb_007533_040 Hb_000638_130 Hb_000638_130 Hb_003913_130--Hb_000638_130 Hb_003913_130--Hb_000140_090 Hb_001014_060 Hb_001014_060 Hb_003913_130--Hb_001014_060 Hb_000120_640--Hb_001357_200 Hb_000120_640--Hb_001014_060 Hb_000120_640--Hb_003913_130 Hb_000120_640--Hb_000025_350 Hb_000120_640--Hb_007533_040 Hb_032717_060--Hb_006740_030 Hb_000482_040 Hb_000482_040 Hb_032717_060--Hb_000482_040 Hb_002542_110 Hb_002542_110 Hb_032717_060--Hb_002542_110 Hb_001405_070 Hb_001405_070 Hb_032717_060--Hb_001405_070 Hb_001226_140 Hb_001226_140 Hb_032717_060--Hb_001226_140 Hb_009778_060 Hb_009778_060 Hb_032717_060--Hb_009778_060 Hb_004218_010--Hb_003913_130 Hb_004965_110 Hb_004965_110 Hb_004218_010--Hb_004965_110 Hb_000926_200 Hb_000926_200 Hb_004218_010--Hb_000926_200 Hb_003266_030 Hb_003266_030 Hb_004218_010--Hb_003266_030 Hb_053709_050 Hb_053709_050 Hb_004218_010--Hb_053709_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.540402 1.72901 2.58709 1.09643 0.55158 0.963342
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.31756 1.91198 2.36294 1.22417 2.52028

CAGE analysis