Hb_004218_030

Information

Type -
Description -
Location Contig4218: 41409-50189
Sequence    

Annotation

kegg
ID rcu:RCOM_1453040
description hypothetical protein
nr
ID XP_002513083.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID F4JCY2
description CSC1-like protein At3g54510 OS=Arabidopsis thaliana GN=At3g54510 PE=2 SV=1
trembl
ID B9RGD1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1453040 PE=4 SV=1
Gene Ontology
ID GO:0009507
description csc1-like protein at3g54510

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41649: 43848-44734 , PASA_asmbl_41650: 46899-47232
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004218_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000343_030 0.0658874036 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
3 Hb_001268_350 0.084838182 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105115846 [Populus euphratica]
4 Hb_011457_070 0.0851129622 - - 5-methyltetrahydrofolate:homocysteine methyltransferase, putative [Ricinus communis]
5 Hb_002784_110 0.0853956968 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
6 Hb_000327_340 0.0886992772 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
7 Hb_005143_030 0.0890696859 - - PREDICTED: uncharacterized protein LOC105638843 [Jatropha curcas]
8 Hb_000033_030 0.0894139516 - - PREDICTED: ankyrin repeat protein SKIP35 [Jatropha curcas]
9 Hb_003952_150 0.0897809393 - - PREDICTED: cactin [Jatropha curcas]
10 Hb_000107_040 0.0905055027 - - nuclear pore complex protein nup153, putative [Ricinus communis]
11 Hb_025194_040 0.091015326 - - PREDICTED: uncharacterized protein LOC105644854 isoform X2 [Jatropha curcas]
12 Hb_000023_330 0.0914758652 - - RNA recognition motif-containing family protein [Populus trichocarpa]
13 Hb_011173_030 0.0923454933 - - pumilio, putative [Ricinus communis]
14 Hb_000446_120 0.0923706486 - - PREDICTED: uncharacterized transmembrane protein DDB_G0289901 [Jatropha curcas]
15 Hb_002107_070 0.0942052878 - - hypothetical protein RCOM_1598630 [Ricinus communis]
16 Hb_005699_090 0.0945366582 - - PREDICTED: uncharacterized protein LOC105639563 [Jatropha curcas]
17 Hb_009476_040 0.0981738907 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001623_480 0.0988791253 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 13 [Jatropha curcas]
19 Hb_004162_090 0.1006283842 transcription factor TF Family: MYB PREDICTED: transcription factor DIVARICATA [Jatropha curcas]
20 Hb_000920_210 0.1015141214 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]

Gene co-expression network

sample Hb_004218_030 Hb_004218_030 Hb_000343_030 Hb_000343_030 Hb_004218_030--Hb_000343_030 Hb_001268_350 Hb_001268_350 Hb_004218_030--Hb_001268_350 Hb_011457_070 Hb_011457_070 Hb_004218_030--Hb_011457_070 Hb_002784_110 Hb_002784_110 Hb_004218_030--Hb_002784_110 Hb_000327_340 Hb_000327_340 Hb_004218_030--Hb_000327_340 Hb_005143_030 Hb_005143_030 Hb_004218_030--Hb_005143_030 Hb_000300_440 Hb_000300_440 Hb_000343_030--Hb_000300_440 Hb_100215_010 Hb_100215_010 Hb_000343_030--Hb_100215_010 Hb_003952_150 Hb_003952_150 Hb_000343_030--Hb_003952_150 Hb_001621_130 Hb_001621_130 Hb_000343_030--Hb_001621_130 Hb_000920_210 Hb_000920_210 Hb_000343_030--Hb_000920_210 Hb_004718_010 Hb_004718_010 Hb_001268_350--Hb_004718_010 Hb_000035_290 Hb_000035_290 Hb_001268_350--Hb_000035_290 Hb_001247_070 Hb_001247_070 Hb_001268_350--Hb_001247_070 Hb_001268_350--Hb_002784_110 Hb_005699_090 Hb_005699_090 Hb_001268_350--Hb_005699_090 Hb_014267_010 Hb_014267_010 Hb_001268_350--Hb_014267_010 Hb_004162_090 Hb_004162_090 Hb_011457_070--Hb_004162_090 Hb_025194_040 Hb_025194_040 Hb_011457_070--Hb_025194_040 Hb_009193_120 Hb_009193_120 Hb_011457_070--Hb_009193_120 Hb_011457_070--Hb_005143_030 Hb_009476_040 Hb_009476_040 Hb_011457_070--Hb_009476_040 Hb_000446_120 Hb_000446_120 Hb_002784_110--Hb_000446_120 Hb_002784_110--Hb_025194_040 Hb_001913_060 Hb_001913_060 Hb_002784_110--Hb_001913_060 Hb_000788_070 Hb_000788_070 Hb_002784_110--Hb_000788_070 Hb_002784_110--Hb_000035_290 Hb_000183_020 Hb_000183_020 Hb_002784_110--Hb_000183_020 Hb_000616_020 Hb_000616_020 Hb_000327_340--Hb_000616_020 Hb_000270_760 Hb_000270_760 Hb_000327_340--Hb_000270_760 Hb_000244_220 Hb_000244_220 Hb_000327_340--Hb_000244_220 Hb_000327_340--Hb_001268_350 Hb_000327_340--Hb_005699_090 Hb_000327_340--Hb_000343_030 Hb_001575_010 Hb_001575_010 Hb_005143_030--Hb_001575_010 Hb_028487_010 Hb_028487_010 Hb_005143_030--Hb_028487_010 Hb_002107_070 Hb_002107_070 Hb_005143_030--Hb_002107_070 Hb_000369_130 Hb_000369_130 Hb_005143_030--Hb_000369_130 Hb_001821_090 Hb_001821_090 Hb_005143_030--Hb_001821_090 Hb_003498_120 Hb_003498_120 Hb_005143_030--Hb_003498_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.921886 0.987964 0.188392 0.472255 1.10222 1.06802
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.768805 0.448176 0.459745 1.10592 0.753534

CAGE analysis