Hb_004218_100

Information

Type -
Description -
Location Contig4218: 106646-109293
Sequence    

Annotation

kegg
ID rcu:RCOM_1452980
description DNA-directed RNA polymerase II, putative
nr
ID XP_012068630.1
description PREDICTED: DNA-directed RNA polymerase V subunit 5C [Jatropha curcas]
swissprot
ID Q9M1H8
description DNA-directed RNA polymerase V subunit 5C OS=Arabidopsis thaliana GN=NRPE5C PE=2 SV=1
trembl
ID A0A067L8S7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24513 PE=4 SV=1
Gene Ontology
ID GO:0005634
description dna-directed rna polymerase v subunit 5c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41665: 108894-109194
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004218_100 0.0 - - PREDICTED: DNA-directed RNA polymerase V subunit 5C [Jatropha curcas]
2 Hb_002641_170 0.2057702665 - - zinc finger protein, putative [Ricinus communis]
3 Hb_001396_270 0.2078156293 - - 4-coumarate--CoA ligase family protein [Populus trichocarpa]
4 Hb_000367_110 0.2231615798 - - PREDICTED: monodehydroascorbate reductase, chloroplastic isoform X1 [Sesamum indicum]
5 Hb_005914_220 0.2316926873 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
6 Hb_002309_030 0.2372332079 - - Glycerol dehydrogenase large subunit, putative [Theobroma cacao]
7 Hb_006012_030 0.2430500991 - - hypothetical protein POPTR_0008s02380g [Populus trichocarpa]
8 Hb_000087_010 0.2462891671 - - mta/sah nucleosidase, putative [Ricinus communis]
9 Hb_012640_010 0.2520578173 - - -
10 Hb_001741_110 0.252111664 rubber biosynthesis Gene Name: REF7 REF/SRPP-like protein [Glycine soja]
11 Hb_002374_540 0.2525197238 - - RecName: Full=Esterase; AltName: Full=Early nodule-specific protein homolog; AltName: Full=Latex allergen Hev b 13; AltName: Allergen=Hev b 13; Flags: Precursor [Hevea brasiliensis]
12 Hb_178343_010 0.2545413092 - - PREDICTED: two-component response regulator ARR17-like [Jatropha curcas]
13 Hb_000042_120 0.2626360497 - - PREDICTED: uncharacterized protein LOC105632800 [Jatropha curcas]
14 Hb_003906_020 0.2631572828 - - PREDICTED: uncharacterized protein LOC105648535 [Jatropha curcas]
15 Hb_001428_010 0.2640183366 - - PREDICTED: transcription factor PRE1-like [Jatropha curcas]
16 Hb_003333_070 0.2647357223 - - Ent-kaurenoic acid oxidase, putative [Ricinus communis]
17 Hb_000162_270 0.2675161953 - - PREDICTED: uncharacterized protein LOC104442671 [Eucalyptus grandis]
18 Hb_008535_020 0.2711638206 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
19 Hb_006469_110 0.2720572699 - - hypothetical protein JCGZ_12008 [Jatropha curcas]
20 Hb_000188_080 0.2725683668 - - PREDICTED: uncharacterized protein LOC105629484 [Jatropha curcas]

Gene co-expression network

sample Hb_004218_100 Hb_004218_100 Hb_002641_170 Hb_002641_170 Hb_004218_100--Hb_002641_170 Hb_001396_270 Hb_001396_270 Hb_004218_100--Hb_001396_270 Hb_000367_110 Hb_000367_110 Hb_004218_100--Hb_000367_110 Hb_005914_220 Hb_005914_220 Hb_004218_100--Hb_005914_220 Hb_002309_030 Hb_002309_030 Hb_004218_100--Hb_002309_030 Hb_006012_030 Hb_006012_030 Hb_004218_100--Hb_006012_030 Hb_002641_170--Hb_000367_110 Hb_003906_020 Hb_003906_020 Hb_002641_170--Hb_003906_020 Hb_010866_020 Hb_010866_020 Hb_002641_170--Hb_010866_020 Hb_000347_520 Hb_000347_520 Hb_002641_170--Hb_000347_520 Hb_006469_110 Hb_006469_110 Hb_002641_170--Hb_006469_110 Hb_001396_270--Hb_006012_030 Hb_001396_270--Hb_005914_220 Hb_003988_020 Hb_003988_020 Hb_001396_270--Hb_003988_020 Hb_000042_120 Hb_000042_120 Hb_001396_270--Hb_000042_120 Hb_002374_540 Hb_002374_540 Hb_001396_270--Hb_002374_540 Hb_000270_590 Hb_000270_590 Hb_001396_270--Hb_000270_590 Hb_000367_110--Hb_000347_520 Hb_000188_080 Hb_000188_080 Hb_000367_110--Hb_000188_080 Hb_004308_010 Hb_004308_010 Hb_000367_110--Hb_004308_010 Hb_000367_110--Hb_003988_020 Hb_005914_220--Hb_000042_120 Hb_000156_150 Hb_000156_150 Hb_005914_220--Hb_000156_150 Hb_005914_220--Hb_006012_030 Hb_000389_130 Hb_000389_130 Hb_005914_220--Hb_000389_130 Hb_001428_010 Hb_001428_010 Hb_005914_220--Hb_001428_010 Hb_002309_030--Hb_006469_110 Hb_003333_070 Hb_003333_070 Hb_002309_030--Hb_003333_070 Hb_002309_030--Hb_004308_010 Hb_008535_020 Hb_008535_020 Hb_002309_030--Hb_008535_020 Hb_002309_030--Hb_000188_080 Hb_002186_120 Hb_002186_120 Hb_002309_030--Hb_002186_120 Hb_012799_010 Hb_012799_010 Hb_006012_030--Hb_012799_010 Hb_000099_110 Hb_000099_110 Hb_006012_030--Hb_000099_110 Hb_012545_020 Hb_012545_020 Hb_006012_030--Hb_012545_020 Hb_006012_030--Hb_001428_010 Hb_000277_040 Hb_000277_040 Hb_006012_030--Hb_000277_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.128916 0.0364286 0.100182 1.51393 0 0.0765603
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0997389 0 0 0 0

CAGE analysis