Hb_004218_150

Information

Type -
Description -
Location Contig4218: 153230-154009
Sequence    

Annotation

kegg
ID rcu:RCOM_1452700
description electron transporter, putative
nr
ID XP_002513069.1
description electron transporter, putative [Ricinus communis]
swissprot
ID Q9FLE8
description Uncharacterized protein At5g39865 OS=Arabidopsis thaliana GN=At5g39865 PE=2 SV=1
trembl
ID B9RGB7
description Electron transporter, putative OS=Ricinus communis GN=RCOM_1452700 PE=4 SV=1
Gene Ontology
ID GO:0005623
description glutaredoxin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41675: 152740-154580
cDNA
(Sanger)
(ID:Location)		 026_D03.ab1: 153689-154436 , 050_F10.ab1: 153654-154436

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004218_150 0.0 - - electron transporter, putative [Ricinus communis]
2 Hb_000392_070 0.0733901192 - - catalytic, putative [Ricinus communis]
3 Hb_006400_040 0.097796091 - - PREDICTED: uncharacterized protein LOC105642527 [Jatropha curcas]
4 Hb_116349_160 0.1023367184 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
5 Hb_002027_260 0.1082939542 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
6 Hb_005306_110 0.1090178564 - - casein kinase, putative [Ricinus communis]
7 Hb_000139_410 0.1110122729 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
8 Hb_033153_050 0.1127348967 transcription factor TF Family: VOZ conserved hypothetical protein [Ricinus communis]
9 Hb_003376_360 0.1139429329 - - PREDICTED: ubiquitin-like protein 5 [Nelumbo nucifera]
10 Hb_010381_070 0.1153682264 - - PREDICTED: protein STU1-like [Jatropha curcas]
11 Hb_000127_130 0.1176557265 - - PREDICTED: uncharacterized protein LOC105635483 [Jatropha curcas]
12 Hb_001584_330 0.1199055337 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
13 Hb_002119_060 0.1202816933 transcription factor TF Family: Orphans histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
14 Hb_001728_100 0.1205272779 - - hypothetical protein JCGZ_03429 [Jatropha curcas]
15 Hb_001623_420 0.1219735614 - - nucleotide binding protein, putative [Ricinus communis]
16 Hb_000032_320 0.1227918933 - - protein binding protein, putative [Ricinus communis]
17 Hb_007908_020 0.1233941122 - - zinc finger family protein [Populus trichocarpa]
18 Hb_002477_160 0.123545753 - - hypothetical protein L484_013453 [Morus notabilis]
19 Hb_000798_060 0.1241958629 transcription factor TF Family: PHD -
20 Hb_004109_200 0.1242142342 - - PREDICTED: protein OSB2, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_004218_150 Hb_004218_150 Hb_000392_070 Hb_000392_070 Hb_004218_150--Hb_000392_070 Hb_006400_040 Hb_006400_040 Hb_004218_150--Hb_006400_040 Hb_116349_160 Hb_116349_160 Hb_004218_150--Hb_116349_160 Hb_002027_260 Hb_002027_260 Hb_004218_150--Hb_002027_260 Hb_005306_110 Hb_005306_110 Hb_004218_150--Hb_005306_110 Hb_000139_410 Hb_000139_410 Hb_004218_150--Hb_000139_410 Hb_000392_070--Hb_006400_040 Hb_000204_040 Hb_000204_040 Hb_000392_070--Hb_000204_040 Hb_000392_070--Hb_005306_110 Hb_008725_250 Hb_008725_250 Hb_000392_070--Hb_008725_250 Hb_000943_070 Hb_000943_070 Hb_000392_070--Hb_000943_070 Hb_006400_040--Hb_002027_260 Hb_001584_330 Hb_001584_330 Hb_006400_040--Hb_001584_330 Hb_001623_420 Hb_001623_420 Hb_006400_040--Hb_001623_420 Hb_006400_040--Hb_005306_110 Hb_012634_010 Hb_012634_010 Hb_006400_040--Hb_012634_010 Hb_000340_510 Hb_000340_510 Hb_006400_040--Hb_000340_510 Hb_000956_130 Hb_000956_130 Hb_116349_160--Hb_000956_130 Hb_000761_020 Hb_000761_020 Hb_116349_160--Hb_000761_020 Hb_028358_010 Hb_028358_010 Hb_116349_160--Hb_028358_010 Hb_000120_240 Hb_000120_240 Hb_116349_160--Hb_000120_240 Hb_007594_030 Hb_007594_030 Hb_116349_160--Hb_007594_030 Hb_002027_260--Hb_012634_010 Hb_002027_260--Hb_001623_420 Hb_001728_100 Hb_001728_100 Hb_002027_260--Hb_001728_100 Hb_000236_100 Hb_000236_100 Hb_002027_260--Hb_000236_100 Hb_002375_020 Hb_002375_020 Hb_002027_260--Hb_002375_020 Hb_033153_050 Hb_033153_050 Hb_005306_110--Hb_033153_050 Hb_005306_110--Hb_001584_330 Hb_005306_110--Hb_001623_420 Hb_005306_110--Hb_000943_070 Hb_000120_950 Hb_000120_950 Hb_005306_110--Hb_000120_950 Hb_003642_060 Hb_003642_060 Hb_005306_110--Hb_003642_060 Hb_010381_070 Hb_010381_070 Hb_000139_410--Hb_010381_070 Hb_005000_210 Hb_005000_210 Hb_000139_410--Hb_005000_210 Hb_000139_410--Hb_001584_330 Hb_004109_200 Hb_004109_200 Hb_000139_410--Hb_004109_200 Hb_000139_410--Hb_001623_420 Hb_002150_080 Hb_002150_080 Hb_000139_410--Hb_002150_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
710.255 272.52 86.5149 257.303 408.735 347.07
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
396.823 253.45 400.132 101.678 71.0969

CAGE analysis