Hb_004218_160

Information

Type -
Description -
Location Contig4218: 157440-166866
Sequence    

Annotation

kegg
ID mtr:MTR_3g032340
description NBS-LRR type disease resistance protein
nr
ID XP_003599368.1
description NBS-LRR type disease resistance protein [Medicago truncatula]
swissprot
ID Q8S7M7
description Plant intracellular Ras-group-related LRR protein 5 OS=Oryza sativa subsp. japonica GN=IRL5 PE=2 SV=1
trembl
ID G7IX03
description LRR and NB-ARC domain disease resistance protein OS=Medicago truncatula GN=MTR_3g032340 PE=4 SV=2
Gene Ontology
ID GO:0016787
description disease resistance rpp13-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41677: 161749-161963 , PASA_asmbl_41681: 164745-165122 , PASA_asmbl_41682: 165159-165886
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004218_160 0.0 - - NBS-LRR type disease resistance protein [Medicago truncatula]
2 Hb_000085_230 0.1206378434 - - PREDICTED: probable long-chain-alcohol O-fatty-acyltransferase 5 [Jatropha curcas]
3 Hb_002660_040 0.127564469 - - PREDICTED: CASP-like protein 5A1 isoform X1 [Jatropha curcas]
4 Hb_004007_120 0.1342157589 - - PREDICTED: calcium-transporting ATPase 2, plasma membrane-type isoform X1 [Populus euphratica]
5 Hb_000527_140 0.1360391377 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
6 Hb_000120_070 0.136528782 - - PREDICTED: uncharacterized protein LOC105630351 [Jatropha curcas]
7 Hb_000977_090 0.1372396042 - - hypothetical protein POPTR_0010s18550g [Populus trichocarpa]
8 Hb_008175_030 0.1376990634 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 3 [Jatropha curcas]
9 Hb_000657_030 0.1379169259 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
10 Hb_006501_170 0.138564324 - - hypothetical protein JCGZ_07371 [Jatropha curcas]
11 Hb_003453_030 0.1390356337 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
12 Hb_002518_270 0.1399532699 - - glycogen phosphorylase, putative [Ricinus communis]
13 Hb_003106_210 0.139988477 - - PREDICTED: UDP-glycosyltransferase 74B1-like [Jatropha curcas]
14 Hb_001894_040 0.1427901343 - - PREDICTED: carbonic anhydrase 2 isoform X1 [Jatropha curcas]
15 Hb_008226_120 0.1432905003 - - ATP binding protein, putative [Ricinus communis]
16 Hb_000720_210 0.1452222999 - - carbonyl reductase, putative [Ricinus communis]
17 Hb_009581_040 0.14566725 - - hypothetical protein B456_011G052100 [Gossypium raimondii]
18 Hb_002218_070 0.145917734 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
19 Hb_002928_180 0.1470621763 - - catalase CAT1 [Manihot esculenta]
20 Hb_000638_090 0.1473177434 - - ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_004218_160 Hb_004218_160 Hb_000085_230 Hb_000085_230 Hb_004218_160--Hb_000085_230 Hb_002660_040 Hb_002660_040 Hb_004218_160--Hb_002660_040 Hb_004007_120 Hb_004007_120 Hb_004218_160--Hb_004007_120 Hb_000527_140 Hb_000527_140 Hb_004218_160--Hb_000527_140 Hb_000120_070 Hb_000120_070 Hb_004218_160--Hb_000120_070 Hb_000977_090 Hb_000977_090 Hb_004218_160--Hb_000977_090 Hb_001894_040 Hb_001894_040 Hb_000085_230--Hb_001894_040 Hb_000579_180 Hb_000579_180 Hb_000085_230--Hb_000579_180 Hb_001514_210 Hb_001514_210 Hb_000085_230--Hb_001514_210 Hb_012753_200 Hb_012753_200 Hb_000085_230--Hb_012753_200 Hb_000008_080 Hb_000008_080 Hb_000085_230--Hb_000008_080 Hb_000836_390 Hb_000836_390 Hb_000085_230--Hb_000836_390 Hb_002660_040--Hb_000527_140 Hb_064985_010 Hb_064985_010 Hb_002660_040--Hb_064985_010 Hb_005880_010 Hb_005880_010 Hb_002660_040--Hb_005880_010 Hb_002833_020 Hb_002833_020 Hb_002660_040--Hb_002833_020 Hb_001008_110 Hb_001008_110 Hb_002660_040--Hb_001008_110 Hb_006241_010 Hb_006241_010 Hb_002660_040--Hb_006241_010 Hb_004007_120--Hb_000977_090 Hb_004007_120--Hb_000120_070 Hb_000914_130 Hb_000914_130 Hb_004007_120--Hb_000914_130 Hb_003556_070 Hb_003556_070 Hb_004007_120--Hb_003556_070 Hb_005649_010 Hb_005649_010 Hb_004007_120--Hb_005649_010 Hb_114684_010 Hb_114684_010 Hb_000527_140--Hb_114684_010 Hb_000527_140--Hb_064985_010 Hb_042202_020 Hb_042202_020 Hb_000527_140--Hb_042202_020 Hb_000527_140--Hb_001008_110 Hb_000847_020 Hb_000847_020 Hb_000527_140--Hb_000847_020 Hb_000120_070--Hb_000836_390 Hb_007765_140 Hb_007765_140 Hb_000120_070--Hb_007765_140 Hb_008215_010 Hb_008215_010 Hb_000120_070--Hb_008215_010 Hb_000075_110 Hb_000075_110 Hb_000120_070--Hb_000075_110 Hb_000120_070--Hb_003556_070 Hb_006970_150 Hb_006970_150 Hb_000120_070--Hb_006970_150 Hb_000977_090--Hb_003556_070 Hb_000977_090--Hb_000120_070 Hb_052764_080 Hb_052764_080 Hb_000977_090--Hb_052764_080 Hb_073119_010 Hb_073119_010 Hb_000977_090--Hb_073119_010 Hb_002324_050 Hb_002324_050 Hb_000977_090--Hb_002324_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.153504 5.27294 1.28643 1.48617 0.0488174 0.205992
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.249186 0.139174 0.097496 4.26003 1.04735

CAGE analysis