Hb_004218_180

Information

Type -
Description -
Location Contig4218: 176117-184604
Sequence    

Annotation

kegg
ID rcu:RCOM_1452660
description WD-repeat protein, putative (EC:2.3.1.48)
nr
ID XP_012068650.1
description PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
swissprot
ID Q6NLV4
description Flowering time control protein FY OS=Arabidopsis thaliana GN=FY PE=1 SV=1
trembl
ID A0A067KZU9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24522 PE=4 SV=1
Gene Ontology
ID GO:0004402
description flowering time control protein fy

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41684: 176416-183880 , PASA_asmbl_41685: 176416-183883 , PASA_asmbl_41686: 178480-178775
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004218_180 0.0 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
2 Hb_006100_020 0.0653531241 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
3 Hb_000270_170 0.0721850345 - - PREDICTED: formin-like protein 5 [Jatropha curcas]
4 Hb_011537_060 0.0729148525 - - UPF0061 protein azo1574 [Morus notabilis]
5 Hb_001975_150 0.0733291719 - - PREDICTED: RINT1-like protein MAG2L [Jatropha curcas]
6 Hb_008948_020 0.0761321846 - - hypothetical protein JCGZ_21216 [Jatropha curcas]
7 Hb_001141_240 0.0772788562 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
8 Hb_005489_040 0.0784006966 - - PREDICTED: cullin-1 [Jatropha curcas]
9 Hb_000635_060 0.0802886144 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
10 Hb_007413_010 0.0817018453 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
11 Hb_001008_130 0.0820888159 transcription factor TF Family: mTERF PREDICTED: cytochrome c1-2, heme protein, mitochondrial-like [Elaeis guineensis]
12 Hb_001691_200 0.0823296964 - - DNA-directed RNA polymerase II subunit RPB2 [Auxenochlorella protothecoides]
13 Hb_005260_030 0.0836795765 - - PREDICTED: uncharacterized protein LOC105633782 [Jatropha curcas]
14 Hb_004306_120 0.0837765364 - - DNA binding protein, putative [Ricinus communis]
15 Hb_007904_300 0.08404735 - - copine, putative [Ricinus communis]
16 Hb_001478_010 0.0844802654 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Jatropha curcas]
17 Hb_000535_050 0.0846325916 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Jatropha curcas]
18 Hb_000059_240 0.0853176963 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
19 Hb_006210_010 0.0871402812 - - PREDICTED: probable acyl-activating enzyme 17, peroxisomal isoform X2 [Jatropha curcas]
20 Hb_033312_130 0.0873061153 - - PREDICTED: protein TIC 40, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_004218_180 Hb_004218_180 Hb_006100_020 Hb_006100_020 Hb_004218_180--Hb_006100_020 Hb_000270_170 Hb_000270_170 Hb_004218_180--Hb_000270_170 Hb_011537_060 Hb_011537_060 Hb_004218_180--Hb_011537_060 Hb_001975_150 Hb_001975_150 Hb_004218_180--Hb_001975_150 Hb_008948_020 Hb_008948_020 Hb_004218_180--Hb_008948_020 Hb_001141_240 Hb_001141_240 Hb_004218_180--Hb_001141_240 Hb_002042_050 Hb_002042_050 Hb_006100_020--Hb_002042_050 Hb_033312_130 Hb_033312_130 Hb_006100_020--Hb_033312_130 Hb_006100_020--Hb_001141_240 Hb_048476_080 Hb_048476_080 Hb_006100_020--Hb_048476_080 Hb_001008_130 Hb_001008_130 Hb_006100_020--Hb_001008_130 Hb_000169_020 Hb_000169_020 Hb_006100_020--Hb_000169_020 Hb_000960_080 Hb_000960_080 Hb_000270_170--Hb_000960_080 Hb_001507_050 Hb_001507_050 Hb_000270_170--Hb_001507_050 Hb_011674_040 Hb_011674_040 Hb_000270_170--Hb_011674_040 Hb_000270_170--Hb_006100_020 Hb_000318_150 Hb_000318_150 Hb_000270_170--Hb_000318_150 Hb_001488_020 Hb_001488_020 Hb_000270_170--Hb_001488_020 Hb_011537_060--Hb_001975_150 Hb_007933_040 Hb_007933_040 Hb_011537_060--Hb_007933_040 Hb_005489_040 Hb_005489_040 Hb_011537_060--Hb_005489_040 Hb_003340_010 Hb_003340_010 Hb_011537_060--Hb_003340_010 Hb_002874_110 Hb_002874_110 Hb_011537_060--Hb_002874_110 Hb_000504_180 Hb_000504_180 Hb_001975_150--Hb_000504_180 Hb_000185_220 Hb_000185_220 Hb_001975_150--Hb_000185_220 Hb_000635_060 Hb_000635_060 Hb_001975_150--Hb_000635_060 Hb_003517_070 Hb_003517_070 Hb_001975_150--Hb_003517_070 Hb_002411_110 Hb_002411_110 Hb_008948_020--Hb_002411_110 Hb_007413_010 Hb_007413_010 Hb_008948_020--Hb_007413_010 Hb_001716_040 Hb_001716_040 Hb_008948_020--Hb_001716_040 Hb_006913_020 Hb_006913_020 Hb_008948_020--Hb_006913_020 Hb_004435_030 Hb_004435_030 Hb_008948_020--Hb_004435_030 Hb_005582_040 Hb_005582_040 Hb_008948_020--Hb_005582_040 Hb_000815_300 Hb_000815_300 Hb_001141_240--Hb_000815_300 Hb_006210_010 Hb_006210_010 Hb_001141_240--Hb_006210_010 Hb_000139_080 Hb_000139_080 Hb_001141_240--Hb_000139_080 Hb_001811_170 Hb_001811_170 Hb_001141_240--Hb_001811_170 Hb_006970_020 Hb_006970_020 Hb_001141_240--Hb_006970_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.15985 5.89864 5.181 5.75542 2.30754 2.96804
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.23323 4.60509 3.42502 7.18439 9.15595

CAGE analysis