Hb_004218_200

Information

Type -
Description -
Location Contig4218: 192874-201871
Sequence    

Annotation

kegg
ID rcu:RCOM_1452650
description Ran GTPase binding protein, putative
nr
ID XP_002513064.1
description Ran GTPase binding protein, putative [Ricinus communis]
swissprot
ID Q9FN03
description Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1
trembl
ID B9RGB2
description Ran GTPase binding protein, putative OS=Ricinus communis GN=RCOM_1452650 PE=4 SV=1
Gene Ontology
ID GO:0005634
description regulator of chromosome condensation family with fyve zinc finger domain isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41694: 192632-193777 , PASA_asmbl_41696: 195844-195985 , PASA_asmbl_41697: 197789-201975 , PASA_asmbl_41698: 202063-202299
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004218_200 0.0 - - Ran GTPase binding protein, putative [Ricinus communis]
2 Hb_000320_310 0.0997838407 - - PREDICTED: ankyrin repeat domain-containing protein 13C [Jatropha curcas]
3 Hb_003580_050 0.1010286867 - - PREDICTED: TBC1 domain family member 2B [Jatropha curcas]
4 Hb_001357_050 0.1024332558 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12-like [Jatropha curcas]
5 Hb_001104_150 0.1069849572 - - PREDICTED: protein ROS1 [Jatropha curcas]
6 Hb_028008_040 0.1146032993 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005730_110 0.1147193857 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
8 Hb_070498_010 0.1178383806 - - receptor kinase, putative [Ricinus communis]
9 Hb_012404_020 0.120305178 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001517_070 0.1213085709 - - protein with unknown function [Ricinus communis]
11 Hb_005568_020 0.12209477 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
12 Hb_001936_190 0.1230685602 - - hypothetical protein JCGZ_17780 [Jatropha curcas]
13 Hb_002078_390 0.1281787142 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 2 [Jatropha curcas]
14 Hb_000996_030 0.1293717811 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g63430 isoform X1 [Jatropha curcas]
15 Hb_001040_080 0.1299366842 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
16 Hb_000417_050 0.1309363687 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1 [Jatropha curcas]
17 Hb_000207_350 0.1310428106 - - PREDICTED: embryogenesis-associated protein EMB8 [Jatropha curcas]
18 Hb_005000_010 0.1314337013 - - PREDICTED: K(+) efflux antiporter 4 isoform X1 [Jatropha curcas]
19 Hb_022092_110 0.1329485486 - - PREDICTED: probable protein phosphatase 2C 52 [Jatropha curcas]
20 Hb_003666_070 0.133007236 - - PREDICTED: BTB/POZ domain-containing protein At5g66560 [Jatropha curcas]

Gene co-expression network

sample Hb_004218_200 Hb_004218_200 Hb_000320_310 Hb_000320_310 Hb_004218_200--Hb_000320_310 Hb_003580_050 Hb_003580_050 Hb_004218_200--Hb_003580_050 Hb_001357_050 Hb_001357_050 Hb_004218_200--Hb_001357_050 Hb_001104_150 Hb_001104_150 Hb_004218_200--Hb_001104_150 Hb_028008_040 Hb_028008_040 Hb_004218_200--Hb_028008_040 Hb_005730_110 Hb_005730_110 Hb_004218_200--Hb_005730_110 Hb_005000_010 Hb_005000_010 Hb_000320_310--Hb_005000_010 Hb_010863_030 Hb_010863_030 Hb_000320_310--Hb_010863_030 Hb_002897_010 Hb_002897_010 Hb_000320_310--Hb_002897_010 Hb_001123_310 Hb_001123_310 Hb_000320_310--Hb_001123_310 Hb_001195_550 Hb_001195_550 Hb_000320_310--Hb_001195_550 Hb_003580_050--Hb_028008_040 Hb_000977_030 Hb_000977_030 Hb_003580_050--Hb_000977_030 Hb_000996_030 Hb_000996_030 Hb_003580_050--Hb_000996_030 Hb_004696_010 Hb_004696_010 Hb_003580_050--Hb_004696_010 Hb_002724_010 Hb_002724_010 Hb_003580_050--Hb_002724_010 Hb_064546_010 Hb_064546_010 Hb_001357_050--Hb_064546_010 Hb_000417_050 Hb_000417_050 Hb_001357_050--Hb_000417_050 Hb_001357_050--Hb_003580_050 Hb_001357_050--Hb_004696_010 Hb_000012_330 Hb_000012_330 Hb_001357_050--Hb_000012_330 Hb_000207_350 Hb_000207_350 Hb_001104_150--Hb_000207_350 Hb_001775_120 Hb_001775_120 Hb_001104_150--Hb_001775_120 Hb_005568_020 Hb_005568_020 Hb_001104_150--Hb_005568_020 Hb_001104_150--Hb_005730_110 Hb_022092_110 Hb_022092_110 Hb_001104_150--Hb_022092_110 Hb_002078_390 Hb_002078_390 Hb_028008_040--Hb_002078_390 Hb_028008_040--Hb_004696_010 Hb_001936_190 Hb_001936_190 Hb_028008_040--Hb_001936_190 Hb_012404_020 Hb_012404_020 Hb_028008_040--Hb_012404_020 Hb_005365_010 Hb_005365_010 Hb_028008_040--Hb_005365_010 Hb_000627_040 Hb_000627_040 Hb_005730_110--Hb_000627_040 Hb_026240_020 Hb_026240_020 Hb_005730_110--Hb_026240_020 Hb_005730_110--Hb_012404_020 Hb_000418_170 Hb_000418_170 Hb_005730_110--Hb_000418_170 Hb_005730_110--Hb_022092_110 Hb_004592_010 Hb_004592_010 Hb_005730_110--Hb_004592_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.397169 0.889857 4.25744 4.16884 0.0639546 0.155301
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0134069 0.0105504 0.0404125 0.949502 2.74985

CAGE analysis