Hb_004218_230

Information

Type -
Description -
Location Contig4218: 210841-214294
Sequence    

Annotation

kegg
ID rcu:RCOM_1452620
description Peptide transporter, putative
nr
ID XP_002513061.1
description Peptide transporter, putative [Ricinus communis]
swissprot
ID Q9M1I2
description Protein NRT1/ PTR FAMILY 5.4 OS=Arabidopsis thaliana GN=NPF5.4 PE=2 SV=1
trembl
ID B9RGA9
description Peptide transporter, putative OS=Ricinus communis GN=RCOM_1452620 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41700: 211421-213578
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004218_230 0.0 - - Peptide transporter, putative [Ricinus communis]
2 Hb_000127_070 0.0969647516 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
3 Hb_000504_050 0.0971425168 transcription factor TF Family: LOB LOB domain protein 25 [Populus trichocarpa]
4 Hb_002110_210 0.1026950576 - - purine transporter, putative [Ricinus communis]
5 Hb_002735_010 0.1158863928 - - PREDICTED: CLAVATA3/ESR (CLE)-related protein 44 [Prunus mume]
6 Hb_027445_080 0.1208458523 transcription factor TF Family: LOB LOB domain protein 25 [Populus trichocarpa]
7 Hb_017661_020 0.1208696044 - - hypothetical protein JCGZ_11176 [Jatropha curcas]
8 Hb_009543_040 0.1221458226 - - -
9 Hb_000751_210 0.1241659054 - - PREDICTED: petal death protein isoform X2 [Jatropha curcas]
10 Hb_132438_010 0.1263840442 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
11 Hb_002241_020 0.1299899702 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
12 Hb_000575_010 0.1332777323 - - PREDICTED: uncharacterized protein LOC103454030 [Malus domestica]
13 Hb_000616_060 0.1347072458 - - -
14 Hb_000891_060 0.1360304326 - - hypothetical protein JCGZ_11234 [Jatropha curcas]
15 Hb_105446_010 0.1381886954 - - -
16 Hb_005203_010 0.1383236159 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
17 Hb_002282_030 0.1385461645 - - -
18 Hb_012395_150 0.1395386298 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
19 Hb_004837_170 0.1439861545 - - PREDICTED: uncharacterized protein LOC105648284 [Jatropha curcas]
20 Hb_012879_010 0.1475063654 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004218_230 Hb_004218_230 Hb_000127_070 Hb_000127_070 Hb_004218_230--Hb_000127_070 Hb_000504_050 Hb_000504_050 Hb_004218_230--Hb_000504_050 Hb_002110_210 Hb_002110_210 Hb_004218_230--Hb_002110_210 Hb_002735_010 Hb_002735_010 Hb_004218_230--Hb_002735_010 Hb_027445_080 Hb_027445_080 Hb_004218_230--Hb_027445_080 Hb_017661_020 Hb_017661_020 Hb_004218_230--Hb_017661_020 Hb_000127_070--Hb_017661_020 Hb_000127_070--Hb_002735_010 Hb_000127_070--Hb_002110_210 Hb_005147_020 Hb_005147_020 Hb_000127_070--Hb_005147_020 Hb_004590_010 Hb_004590_010 Hb_000127_070--Hb_004590_010 Hb_012879_010 Hb_012879_010 Hb_000504_050--Hb_012879_010 Hb_105446_010 Hb_105446_010 Hb_000504_050--Hb_105446_010 Hb_000751_210 Hb_000751_210 Hb_000504_050--Hb_000751_210 Hb_000504_050--Hb_002110_210 Hb_013691_040 Hb_013691_040 Hb_000504_050--Hb_013691_040 Hb_002241_020 Hb_002241_020 Hb_002110_210--Hb_002241_020 Hb_002110_210--Hb_002735_010 Hb_015473_010 Hb_015473_010 Hb_002110_210--Hb_015473_010 Hb_002110_210--Hb_005147_020 Hb_000152_250 Hb_000152_250 Hb_002735_010--Hb_000152_250 Hb_002735_010--Hb_015473_010 Hb_140848_010 Hb_140848_010 Hb_002735_010--Hb_140848_010 Hb_002735_010--Hb_002241_020 Hb_002762_070 Hb_002762_070 Hb_027445_080--Hb_002762_070 Hb_027445_080--Hb_017661_020 Hb_005203_010 Hb_005203_010 Hb_027445_080--Hb_005203_010 Hb_031862_090 Hb_031862_090 Hb_027445_080--Hb_031862_090 Hb_004837_170 Hb_004837_170 Hb_027445_080--Hb_004837_170 Hb_002282_030 Hb_002282_030 Hb_027445_080--Hb_002282_030 Hb_017661_020--Hb_002762_070 Hb_012395_150 Hb_012395_150 Hb_017661_020--Hb_012395_150 Hb_017661_020--Hb_005203_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0096484 10.6409 0.162492 10.6336 0.272004 0.0261368
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.034501 0 6.03797 0.145937

CAGE analysis