Hb_004218_240

Information

Type -
Description -
Location Contig4218: 228017-244251
Sequence    

Annotation

kegg
ID pop:POPTR_0003s19630g
description POPTRDRAFT_758152; hypothetical protein
nr
ID XP_012068654.1
description PREDICTED: DNA-directed RNA polymerase V subunit 1 [Jatropha curcas]
swissprot
ID Q5D869
description DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana GN=NRPE1 PE=1 SV=1
trembl
ID B9GWY0
description DNA-directed RNA polymerase OS=Populus trichocarpa GN=POPTR_0003s19630g PE=3 SV=2
Gene Ontology
ID GO:0005488
description dna-directed rna polymerase v subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41702: 228647-233141 , PASA_asmbl_41703: 229173-229953 , PASA_asmbl_41705: 233761-238885 , PASA_asmbl_41706: 238900-241088 , PASA_asmbl_41707: 241486-244210
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004218_240 0.0 - - PREDICTED: DNA-directed RNA polymerase V subunit 1 [Jatropha curcas]
2 Hb_000023_190 0.0595242294 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
3 Hb_003464_020 0.0712732231 - - srpk, putative [Ricinus communis]
4 Hb_006915_060 0.0751910119 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
5 Hb_010381_060 0.0752995618 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
6 Hb_009535_020 0.0753093937 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
7 Hb_000436_040 0.0757725069 - - PREDICTED: transportin-1 [Jatropha curcas]
8 Hb_021409_170 0.0775276023 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
9 Hb_000347_130 0.0784509135 - - PREDICTED: nuclear pore complex protein NUP107 [Jatropha curcas]
10 Hb_002235_160 0.0800512733 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
11 Hb_006449_050 0.0802657551 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX2-like [Jatropha curcas]
12 Hb_001473_090 0.0804066593 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
13 Hb_000567_050 0.0811283617 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
14 Hb_000209_070 0.0827601698 - - PREDICTED: chloride channel protein CLC-f isoform X1 [Jatropha curcas]
15 Hb_000600_070 0.0845767297 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
16 Hb_000714_050 0.0849907682 - - PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like [Jatropha curcas]
17 Hb_015763_030 0.0850404732 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003966_030 0.0877776648 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X7 [Jatropha curcas]
19 Hb_000300_580 0.0885401038 - - PREDICTED: importin-5-like [Jatropha curcas]
20 Hb_001599_030 0.0888607608 - - PREDICTED: valine--tRNA ligase [Jatropha curcas]

Gene co-expression network

sample Hb_004218_240 Hb_004218_240 Hb_000023_190 Hb_000023_190 Hb_004218_240--Hb_000023_190 Hb_003464_020 Hb_003464_020 Hb_004218_240--Hb_003464_020 Hb_006915_060 Hb_006915_060 Hb_004218_240--Hb_006915_060 Hb_010381_060 Hb_010381_060 Hb_004218_240--Hb_010381_060 Hb_009535_020 Hb_009535_020 Hb_004218_240--Hb_009535_020 Hb_000436_040 Hb_000436_040 Hb_004218_240--Hb_000436_040 Hb_000023_190--Hb_003464_020 Hb_000567_050 Hb_000567_050 Hb_000023_190--Hb_000567_050 Hb_000023_190--Hb_010381_060 Hb_001488_410 Hb_001488_410 Hb_000023_190--Hb_001488_410 Hb_021409_170 Hb_021409_170 Hb_000023_190--Hb_021409_170 Hb_003464_020--Hb_010381_060 Hb_003464_020--Hb_021409_170 Hb_003464_020--Hb_001488_410 Hb_003464_020--Hb_000567_050 Hb_002044_060 Hb_002044_060 Hb_003464_020--Hb_002044_060 Hb_003544_100 Hb_003544_100 Hb_006915_060--Hb_003544_100 Hb_009411_010 Hb_009411_010 Hb_006915_060--Hb_009411_010 Hb_003847_120 Hb_003847_120 Hb_006915_060--Hb_003847_120 Hb_000010_180 Hb_000010_180 Hb_006915_060--Hb_000010_180 Hb_001599_030 Hb_001599_030 Hb_006915_060--Hb_001599_030 Hb_000714_050 Hb_000714_050 Hb_010381_060--Hb_000714_050 Hb_000029_130 Hb_000029_130 Hb_010381_060--Hb_000029_130 Hb_009627_010 Hb_009627_010 Hb_010381_060--Hb_009627_010 Hb_010381_060--Hb_001599_030 Hb_000600_070 Hb_000600_070 Hb_009535_020--Hb_000600_070 Hb_009535_020--Hb_000023_190 Hb_028487_110 Hb_028487_110 Hb_009535_020--Hb_028487_110 Hb_028639_010 Hb_028639_010 Hb_009535_020--Hb_028639_010 Hb_009535_020--Hb_000567_050 Hb_000436_040--Hb_021409_170 Hb_000436_040--Hb_000023_190 Hb_000347_130 Hb_000347_130 Hb_000436_040--Hb_000347_130 Hb_000436_040--Hb_003464_020 Hb_002893_150 Hb_002893_150 Hb_000436_040--Hb_002893_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.6624 5.05946 4.40533 5.18273 12.2354 16.2719
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.39305 2.31216 5.76226 6.0221 6.62726

CAGE analysis