Hb_004218_250

Information

Type -
Description -
Location Contig4218: 245251-256427
Sequence    

Annotation

kegg
ID rcu:RCOM_1452500
description beta-galactosidase, putative (EC:3.2.1.23)
nr
ID XP_012068655.1
description PREDICTED: beta-galactosidase [Jatropha curcas]
swissprot
ID A5F5U6
description Beta-galactosidase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395) GN=lacZ PE=3 SV=2
trembl
ID A0A067L7P4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24529 PE=3 SV=1
Gene Ontology
ID GO:0009341
description beta-galactosidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41708: 245260-245494 , PASA_asmbl_41709: 246319-256412 , PASA_asmbl_41710: 246319-256412
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004218_250 0.0 - - PREDICTED: beta-galactosidase [Jatropha curcas]
2 Hb_185830_070 0.093555734 - - PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]
3 Hb_000940_150 0.0979995258 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
4 Hb_000317_350 0.1076508561 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
5 Hb_000022_170 0.1104440656 - - PREDICTED: uncharacterized protein LOC105628473 [Jatropha curcas]
6 Hb_000022_150 0.1122553657 - - -
7 Hb_002027_190 0.1150900992 - - PREDICTED: autophagy-related protein 18g [Jatropha curcas]
8 Hb_001223_010 0.1154270936 - - PREDICTED: FGGY carbohydrate kinase domain-containing protein isoform X2 [Jatropha curcas]
9 Hb_000321_090 0.1179457946 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
10 Hb_000049_250 0.1182529457 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
11 Hb_011485_060 0.118309065 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]
12 Hb_000009_120 0.1187298849 - - PREDICTED: probable Xaa-Pro aminopeptidase P isoform X1 [Jatropha curcas]
13 Hb_000574_530 0.1187679523 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
14 Hb_000175_120 0.1191570039 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
15 Hb_007546_030 0.120414391 - - transcription cofactor, putative [Ricinus communis]
16 Hb_001006_010 0.121524691 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
17 Hb_000800_110 0.122181475 - - NAD dehydrogenase, putative [Ricinus communis]
18 Hb_000080_110 0.122406937 - - PREDICTED: GPI ethanolamine phosphate transferase 3 isoform X1 [Jatropha curcas]
19 Hb_000589_380 0.1232263025 - - Phosphoribosylformylglycinamidine synthase, putative [Ricinus communis]
20 Hb_005333_050 0.126166246 - - PREDICTED: glucose-6-phosphate isomerase 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_004218_250 Hb_004218_250 Hb_185830_070 Hb_185830_070 Hb_004218_250--Hb_185830_070 Hb_000940_150 Hb_000940_150 Hb_004218_250--Hb_000940_150 Hb_000317_350 Hb_000317_350 Hb_004218_250--Hb_000317_350 Hb_000022_170 Hb_000022_170 Hb_004218_250--Hb_000022_170 Hb_000022_150 Hb_000022_150 Hb_004218_250--Hb_000022_150 Hb_002027_190 Hb_002027_190 Hb_004218_250--Hb_002027_190 Hb_185830_070--Hb_000940_150 Hb_000175_120 Hb_000175_120 Hb_185830_070--Hb_000175_120 Hb_185830_070--Hb_002027_190 Hb_000631_110 Hb_000631_110 Hb_185830_070--Hb_000631_110 Hb_000574_530 Hb_000574_530 Hb_185830_070--Hb_000574_530 Hb_000940_150--Hb_000631_110 Hb_000940_150--Hb_000175_120 Hb_000940_150--Hb_000022_170 Hb_000940_150--Hb_000574_530 Hb_028960_030 Hb_028960_030 Hb_000317_350--Hb_028960_030 Hb_000049_250 Hb_000049_250 Hb_000317_350--Hb_000049_250 Hb_005333_050 Hb_005333_050 Hb_000317_350--Hb_005333_050 Hb_000321_090 Hb_000321_090 Hb_000317_350--Hb_000321_090 Hb_000009_030 Hb_000009_030 Hb_000317_350--Hb_000009_030 Hb_020805_180 Hb_020805_180 Hb_000317_350--Hb_020805_180 Hb_000022_170--Hb_000175_120 Hb_000022_170--Hb_000631_110 Hb_000950_060 Hb_000950_060 Hb_000022_170--Hb_000950_060 Hb_000800_110 Hb_000800_110 Hb_000022_170--Hb_000800_110 Hb_000022_150--Hb_005333_050 Hb_000742_170 Hb_000742_170 Hb_000022_150--Hb_000742_170 Hb_000022_150--Hb_000317_350 Hb_000022_150--Hb_000800_110 Hb_000022_150--Hb_000950_060 Hb_002027_190--Hb_000321_090 Hb_002851_010 Hb_002851_010 Hb_002027_190--Hb_002851_010 Hb_000080_110 Hb_000080_110 Hb_002027_190--Hb_000080_110 Hb_002027_190--Hb_020805_180 Hb_033799_010 Hb_033799_010 Hb_002027_190--Hb_033799_010 Hb_007747_170 Hb_007747_170 Hb_002027_190--Hb_007747_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.9276 26.4034 9.04799 15.7308 10.6121 10.9305
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.0075 3.93007 10.9506 45.7361 30.8477

CAGE analysis