Hb_004218_270

Information

Type -
Description -
Location Contig4218: 266741-266974
Sequence    

Annotation

kegg
ID cic:CICLE_v100134152m
description hypothetical protein
nr
ID XP_006429800.1
description hypothetical protein CICLE_v100134152mg, partial [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4SVJ1
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100134152mg PE=4 SV=1
Gene Ontology
ID GO:0016020
description auxin-induced protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004218_270 0.0 - - hypothetical protein CICLE_v100134152mg, partial [Citrus clementina]
2 Hb_093084_030 0.0185992695 - - oleosin2 [Plukenetia volubilis]
3 Hb_162450_010 0.0464943183 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
4 Hb_166360_010 0.0477148745 - - hypothetical protein POPTR_0010s12130g [Populus trichocarpa]
5 Hb_000933_030 0.0600320751 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
6 Hb_011549_040 0.0672919543 - - -
7 Hb_005532_080 0.0690692787 - - PREDICTED: heparanase-like protein 2 [Jatropha curcas]
8 Hb_068804_190 0.0791965704 - - kinase, putative [Ricinus communis]
9 Hb_057862_010 0.0809917084 - - protein binding protein, putative [Ricinus communis]
10 Hb_185608_010 0.0830749713 - - hypothetical protein POPTR_0004s22210g [Populus trichocarpa]
11 Hb_005295_030 0.0858931454 - - PREDICTED: uncharacterized protein LOC105645488 [Jatropha curcas]
12 Hb_007113_060 0.0878323355 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
13 Hb_011689_010 0.0879013465 - - PREDICTED: S-adenosylmethionine decarboxylase proenzyme 4 [Jatropha curcas]
14 Hb_181908_010 0.0884571294 - - PREDICTED: UDP-glycosyltransferase 73C3 [Jatropha curcas]
15 Hb_006977_010 0.0919212798 - - unnamed protein product [Vitis vinifera]
16 Hb_001454_420 0.091962418 - - multidrug resistance pump, putative [Ricinus communis]
17 Hb_004162_200 0.0924095642 - - PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]
18 Hb_007382_110 0.0934798196 - - PREDICTED: bidirectional sugar transporter N3 [Jatropha curcas]
19 Hb_002740_140 0.0940143037 - - hypothetical protein L484_022679 [Morus notabilis]
20 Hb_004686_040 0.0952605415 - - hypothetical protein POPTR_0016s05690g [Populus trichocarpa]

Gene co-expression network

sample Hb_004218_270 Hb_004218_270 Hb_093084_030 Hb_093084_030 Hb_004218_270--Hb_093084_030 Hb_162450_010 Hb_162450_010 Hb_004218_270--Hb_162450_010 Hb_166360_010 Hb_166360_010 Hb_004218_270--Hb_166360_010 Hb_000933_030 Hb_000933_030 Hb_004218_270--Hb_000933_030 Hb_011549_040 Hb_011549_040 Hb_004218_270--Hb_011549_040 Hb_005532_080 Hb_005532_080 Hb_004218_270--Hb_005532_080 Hb_093084_030--Hb_162450_010 Hb_093084_030--Hb_166360_010 Hb_181908_010 Hb_181908_010 Hb_093084_030--Hb_181908_010 Hb_185608_010 Hb_185608_010 Hb_093084_030--Hb_185608_010 Hb_093084_030--Hb_005532_080 Hb_162450_010--Hb_166360_010 Hb_057862_010 Hb_057862_010 Hb_162450_010--Hb_057862_010 Hb_162450_010--Hb_185608_010 Hb_162450_010--Hb_005532_080 Hb_166360_010--Hb_005532_080 Hb_068804_190 Hb_068804_190 Hb_166360_010--Hb_068804_190 Hb_166360_010--Hb_011549_040 Hb_166360_010--Hb_000933_030 Hb_000933_030--Hb_011549_040 Hb_000742_070 Hb_000742_070 Hb_000933_030--Hb_000742_070 Hb_023582_030 Hb_023582_030 Hb_000933_030--Hb_023582_030 Hb_000134_190 Hb_000134_190 Hb_000933_030--Hb_000134_190 Hb_011549_040--Hb_068804_190 Hb_011549_040--Hb_005532_080 Hb_056506_040 Hb_056506_040 Hb_011549_040--Hb_056506_040 Hb_010577_020 Hb_010577_020 Hb_011549_040--Hb_010577_020 Hb_005532_080--Hb_068804_190 Hb_007382_110 Hb_007382_110 Hb_005532_080--Hb_007382_110 Hb_005532_080--Hb_056506_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.2788 4.16806 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.6031

CAGE analysis